SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/32479
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10021 O_BomoASG1901_5prime_partial:A_BomoASG_c12206_g1_i1
110bp
10022 O_BomoASG19020_3prime_partial:A_BomoASG_c30415_g1_i1
429bp
 uncharacterized_protein_C18orf8_[Bombyx_mori]
GO:0005765 C lysosomal membrane
10023 O_BomoASG19021_3prime_partial:A_BomoASG_c30416_g1_i1
561bp
 zinc_finger_protein_226_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
10024 O_BomoASG19022_complete:A_BomoASG_c30416_g1_i1
148bp
10025 O_BomoASG19023_complete:A_BomoASG_c30416_g1_i1
132bp
10026 O_BomoASG19024_complete:A_BomoASG_c30417_g1_i1
118bp
10027 O_BomoASG19025_complete:A_BomoASG_c30418_g1_i3
146bp
10028 O_BomoASG19026_complete:A_BomoASG_c30418_g1_i5
146bp
10029 O_BomoASG19027_complete:A_BomoASG_c30419_g1_i2
264bp
 rab-related_protein_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005769 C early endosome
GO:0005802 C trans-Golgi network
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019882 P antigen processing and presentation
GO:0030670 C phagocytic vesicle membrane
GO:0030742 F GTP-dependent protein binding
GO:0031410 C cytoplasmic vesicle
GO:0031905 C early endosome lumen
GO:0035612 F AP-2 adaptor complex binding
GO:0035646 P endosome to melanosome transport
GO:0035650 F AP-1 adaptor complex binding
GO:0035651 F AP-3 adaptor complex binding
GO:0036461 F BLOC-2 complex binding
GO:0042470 C melanosome
GO:0045335 C phagocytic vesicle
GO:0090382 P phagosome maturation
GO:1903232 P melanosome assembly
10030 O_BomoASG19028_5prime_partial:A_BomoASG_c30422_g1_i1
231bp
 mitochondrial_ribosome-associated_GTPase_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0005761 C mitochondrial ribosome
GO:0006417 P regulation of translation
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0042254 P ribosome biogenesis
GO:0044065 P regulation of respiratory system process
GO:0046872 F metal ion binding
GO:0070129 P regulation of mitochondrial translation
10031 O_BomoASG19029_complete:A_BomoASG_c30422_g1_i2
216bp
 mitochondrial_ribosome-associated_GTPase_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0042254 P ribosome biogenesis
GO:0046872 F metal ion binding
10032 O_BomoASG1902_complete:A_BomoASG_c12208_g1_i1
203bp
 myristoylated_alanine-rich_C-kinase_substrate_[Bombyx_mori]
10033 O_BomoASG19030_complete:A_BomoASG_c30422_g1_i2
108bp
 mitochondrial_ribosome-associated_GTPase_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0005761 C mitochondrial ribosome
GO:0006417 P regulation of translation
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0042254 P ribosome biogenesis
GO:0044065 P regulation of respiratory system process
GO:0046872 F metal ion binding
GO:0070129 P regulation of mitochondrial translation
10034 O_BomoASG19031_complete:A_BomoASG_c30422_g1_i3
372bp
 mitochondrial_ribosome-associated_GTPase_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0005761 C mitochondrial ribosome
GO:0006417 P regulation of translation
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0042254 P ribosome biogenesis
GO:0044065 P regulation of respiratory system process
GO:0046872 F metal ion binding
GO:0070129 P regulation of mitochondrial translation
10035 O_BomoASG19032_complete:A_BomoASG_c30423_g1_i1
226bp
 ras-related_protein_Rab-31_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0031623 P receptor internalization
GO:0032588 C trans-Golgi network membrane
GO:0032869 P cellular response to insulin stimulus
GO:0043001 P Golgi to plasma membrane protein transport
GO:0045055 P regulated exocytosis
GO:0045335 C phagocytic vesicle
GO:0048193 P Golgi vesicle transport
GO:0090382 P phagosome maturation
10036 O_BomoASG19033_5prime_partial:A_BomoASG_c30424_g1_i1
224bp
10037 O_BomoASG19034_5prime_partial:A_BomoASG_c30424_g1_i1
170bp
 uncharacterized_protein_LOC101745112_[Bombyx_mori]
10038 O_BomoASG19035_3prime_partial:A_BomoASG_c30424_g1_i1
131bp
10039 O_BomoASG19036_internal:A_BomoASG_c30424_g1_i2
183bp
 uncharacterized_protein_LOC101745112_[Bombyx_mori]
10040 O_BomoASG19037_3prime_partial:A_BomoASG_c30424_g1_i2
140bp
10041 O_BomoASG19038_5prime_partial:A_BomoASG_c30424_g1_i2
101bp
10042 O_BomoASG19039_complete:A_BomoASG_c30425_g1_i1
164bp
 uncharacterized_protein_LOC101746247_isoform_X4_[Bombyx_mori]
10043 O_BomoASG1903_complete:A_BomoASG_c12208_g1_i2
203bp
 myristoylated_alanine-rich_C-kinase_substrate_[Bombyx_mori]
10044 O_BomoASG19040_complete:A_BomoASG_c30425_g1_i2
298bp
 uncharacterized_protein_LOC101746247_isoform_X3_[Bombyx_mori]
10045 O_BomoASG19041_3prime_partial:A_BomoASG_c30426_g1_i1
295bp
 SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_A-like_protein_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000733 P obsolete DNA strand renaturation
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005705 C polytene chromosome interband
GO:0006259 P DNA metabolic process
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0036292 P DNA rewinding
GO:0036310 F ATP-dependent DNA/DNA annealing activity
GO:0071932 P replication fork reversal
GO:1990163 F four-way junction helicase activity
10046 O_BomoASG19042_5prime_partial:A_BomoASG_c30427_g2_i2
148bp
 putative_ATPase_N2B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
10047 O_BomoASG19043_complete:A_BomoASG_c30427_g2_i3
469bp
 putative_ATPase_N2B_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
10048 O_BomoASG19044_5prime_partial:A_BomoASG_c30428_g1_i1
410bp
 zinc_finger_protein_235_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
10049 O_BomoASG19045_complete:A_BomoASG_c30428_g1_i1
165bp
10050 O_BomoASG19046_3prime_partial:A_BomoASG_c30429_g1_i1
567bp
 protein_kibra_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0035330 P regulation of hippo signaling
previous next from show/32479

- SilkBase 1999-2023 -