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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9451 O_BomoSK18507_5prime_partial:A_BomoSK_comp14128_c1_seq9
114bp
9452 O_BomoSK18508_complete:A_BomoSK_comp14128_c1_seq9
107bp
9453 O_BomoSK18509_complete:A_BomoSK_comp14128_c1_seq11
1274bp
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9454 O_BomoSK1850_3prime_partial:A_BomoSK_comp4657_c0_seq1
344bp
 PREDICTED:_E3_ubiquitin-protein_ligase_MIB1_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005938 C cell cortex
GO:0006897 P endocytosis
GO:0007219 P Notch signaling pathway
GO:0007423 P sensory organ development
GO:0008104 P protein localization
GO:0008270 F zinc ion binding
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0008593 P regulation of Notch signaling pathway
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0045179 C apical cortex
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045807 P positive regulation of endocytosis
GO:0046331 P lateral inhibition
GO:0046872 F metal ion binding
GO:0048749 P compound eye development
GO:0061630 F ubiquitin protein ligase activity
9455 O_BomoSK18510_complete:A_BomoSK_comp14128_c1_seq12
1274bp
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9456 O_BomoSK18511_complete:A_BomoSK_comp14128_c1_seq12
154bp
GO:0005576 C extracellular region
9457 O_BomoSK18512_complete:A_BomoSK_comp14130_c1_seq1
427bp
GO:0004872 F signaling receptor activity
GO:0005102 F signaling receptor binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005913 C adherens junction
GO:0005918 C septate junction
GO:0005920 C smooth septate junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007413 P axonal fasciculation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007611 P learning or memory
GO:0008039 P synaptic target recognition
GO:0008355 P olfactory learning
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016200 P synaptic target attraction
GO:0016323 C basolateral plasma membrane
GO:0016328 C lateral plasma membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0030154 P cell differentiation
GO:0030707 P ovarian follicle cell development
GO:0031594 C neuromuscular junction
GO:0031965 C nuclear membrane
GO:0042803 F protein homodimerization activity
GO:0050839 F cell adhesion molecule binding
GO:0055037 C recycling endosome
9458 O_BomoSK18513_complete:A_BomoSK_comp14130_c1_seq1
139bp
9459 O_BomoSK18514_complete:A_BomoSK_comp14130_c1_seq2
474bp
GO:0004872 F signaling receptor activity
GO:0005102 F signaling receptor binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005913 C adherens junction
GO:0005918 C septate junction
GO:0005920 C smooth septate junction
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007413 P axonal fasciculation
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007611 P learning or memory
GO:0008039 P synaptic target recognition
GO:0008355 P olfactory learning
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016200 P synaptic target attraction
GO:0016323 C basolateral plasma membrane
GO:0016328 C lateral plasma membrane
GO:0016339 P calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0030154 P cell differentiation
GO:0030707 P ovarian follicle cell development
GO:0031594 C neuromuscular junction
GO:0031965 C nuclear membrane
GO:0042803 F protein homodimerization activity
GO:0050839 F cell adhesion molecule binding
GO:0055037 C recycling endosome
9460 O_BomoSK18515_complete:A_BomoSK_comp14130_c1_seq2
139bp
9461 O_BomoSK18516_complete:A_BomoSK_comp14131_c0_seq1
316bp
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0045454 P cell redox homeostasis
9462 O_BomoSK18517_complete:A_BomoSK_comp14131_c0_seq3
124bp
GO:0042302 F structural constituent of cuticle
9463 O_BomoSK18518_complete:A_BomoSK_comp14131_c0_seq3
121bp
9464 O_BomoSK18519_complete:A_BomoSK_comp14131_c0_seq5
267bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005623 C obsolete cell
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0045454 P cell redox homeostasis
9465 O_BomoSK1851_5prime_partial:A_BomoSK_comp4659_c0_seq1
365bp
 PREDICTED:_nucleolar_protein_14_[Papilio_machaon]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030490 P maturation of SSU-rRNA
GO:0030515 F snoRNA binding
GO:0030692 C Noc4p-Nop14p complex
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
GO:0042274 P ribosomal small subunit biogenesis
9466 O_BomoSK18520_5prime_partial:A_BomoSK_comp14132_c0_seq1
294bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004190 F aspartic-type endopeptidase activity
GO:0005524 F ATP binding
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
9467 O_BomoSK18521_5prime_partial:A_BomoSK_comp14132_c1_seq1
897bp
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9468 O_BomoSK18522_complete:A_BomoSK_comp14132_c1_seq1
100bp
9469 O_BomoSK18523_complete:A_BomoSK_comp14134_c2_seq1
620bp
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0004879 F nuclear receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0030522 P intracellular receptor signaling pathway
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
9470 O_BomoSK18524_complete:A_BomoSK_comp14134_c2_seq2
608bp
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0004879 F nuclear receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0030522 P intracellular receptor signaling pathway
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0046872 F metal ion binding
9471 O_BomoSK18525_complete:A_BomoSK_comp14135_c0_seq1
123bp
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0016272 C prefoldin complex
GO:0051082 F unfolded protein binding
GO:0051087 F chaperone binding
GO:0051131 P chaperone-mediated protein complex assembly
9472 O_BomoSK18526_complete:A_BomoSK_comp14135_c0_seq2
123bp
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0016272 C prefoldin complex
GO:0051082 F unfolded protein binding
GO:0051087 F chaperone binding
GO:0051131 P chaperone-mediated protein complex assembly
9473 O_BomoSK18527_complete:A_BomoSK_comp14136_c0_seq1
713bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0071897 P DNA biosynthetic process
GO:0097681 P double-strand break repair via alternative nonhomologous end joining
9474 O_BomoSK18528_complete:A_BomoSK_comp14136_c1_seq1
494bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0071897 P DNA biosynthetic process
GO:0097681 P double-strand break repair via alternative nonhomologous end joining
9475 O_BomoSK18529_5prime_partial:A_BomoSK_comp14136_c1_seq1
480bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006261 P DNA-dependent DNA replication
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0071897 P DNA biosynthetic process
GO:0097681 P double-strand break repair via alternative nonhomologous end joining
9476 O_BomoSK1852_3prime_partial:A_BomoSK_comp4659_c0_seq2
624bp
 PREDICTED:_nucleolar_protein_14_[Papilio_xuthus]
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005739 C mitochondrion
GO:0006364 P rRNA processing
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030490 P maturation of SSU-rRNA
GO:0030515 F snoRNA binding
GO:0030686 C 90S preribosome
GO:0030692 C Noc4p-Nop14p complex
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
GO:0042274 P ribosomal small subunit biogenesis
GO:0044822 F RNA binding
9477 O_BomoSK18530_3prime_partial:A_BomoSK_comp14139_c0_seq1
1171bp
GO:0005737 C cytoplasm
GO:0007005 P mitochondrion organization
GO:0048312 P intracellular distribution of mitochondria
9478 O_BomoSK18531_complete:A_BomoSK_comp14139_c0_seq1
134bp
9479 O_BomoSK18532_complete:A_BomoSK_comp14139_c0_seq1
116bp
9480 O_BomoSK18533_complete:A_BomoSK_comp14139_c0_seq1
101bp
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