Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
9181	O_BomoSK18264_complete:A_BomoSK_comp14101_c0_seq3 253bp	Bomo_Chr14
9182	O_BomoSK18265_complete:A_BomoSK_comp14101_c0_seq3 184bp	Bomo_Chr14
9183	O_BomoSK18266_complete:A_BomoSK_comp14101_c0_seq3 116bp	Bomo_Chr14
9184	O_BomoSK18267_5prime_partial:A_BomoSK_comp14101_c0_seq3 115bp	Bomo_Chr14
9185	O_BomoSK18268_3prime_partial:A_BomoSK_comp14101_c0_seq4 598bp	Bomo_Chr14		GO:0000151 C ubiquitin ligase complex GO:0005737 C cytoplasm GO:0006368 P transcription elongation from RNA polymerase II promoter GO:0008023 C transcription elongation factor complex GO:0008270 F zinc ion binding GO:0016567 P protein ubiquitination GO:0016874 F ligase activity GO:0030163 P protein catabolic process GO:0046872 F metal ion binding GO:0061630 F ubiquitin protein ligase activity GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
9186	O_BomoSK18269_complete:A_BomoSK_comp14101_c0_seq4 260bp	Bomo_Chr14
9187	O_BomoSK1826_3prime_partial:A_BomoSK_comp4622_c0_seq2 341bp	Bomo_Chr4	PREDICTED:_nuclear_factor_of_activated_T-cells_5_isoform_X3_[Bombyx_mori]	GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001816 P cytokine production GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006366 P transcription by RNA polymerase II GO:0006970 P response to osmotic stress GO:0007165 P signal transduction GO:0007588 P excretion GO:0010628 P positive regulation of gene expression GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0070884 P regulation of calcineurin-NFAT signaling cascade
9188	O_BomoSK18270_complete:A_BomoSK_comp14101_c0_seq4 191bp	Bomo_Chr14
9189	O_BomoSK18271_complete:A_BomoSK_comp14101_c0_seq4 116bp	Bomo_Chr14
9190	O_BomoSK18272_5prime_partial:A_BomoSK_comp14101_c0_seq4 115bp	Bomo_Chr14
9191	O_BomoSK18273_3prime_partial:A_BomoSK_comp14101_c0_seq5 473bp	Bomo_Chr14		GO:0000151 C ubiquitin ligase complex GO:0005737 C cytoplasm GO:0006368 P transcription elongation from RNA polymerase II promoter GO:0008023 C transcription elongation factor complex GO:0008270 F zinc ion binding GO:0016567 P protein ubiquitination GO:0016874 F ligase activity GO:0030163 P protein catabolic process GO:0046872 F metal ion binding GO:0061630 F ubiquitin protein ligase activity GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
9192	O_BomoSK18274_complete:A_BomoSK_comp14101_c0_seq5 260bp	Bomo_Chr14
9193	O_BomoSK18275_complete:A_BomoSK_comp14101_c0_seq5 191bp	Bomo_Chr14
9194	O_BomoSK18276_complete:A_BomoSK_comp14101_c0_seq5 116bp	Bomo_Chr14
9195	O_BomoSK18277_5prime_partial:A_BomoSK_comp14101_c0_seq5 115bp	Bomo_Chr14
9196	O_BomoSK18278_3prime_partial:A_BomoSK_comp14101_c0_seq6 466bp	Bomo_Chr14		GO:0000151 C ubiquitin ligase complex GO:0005737 C cytoplasm GO:0006368 P transcription elongation from RNA polymerase II promoter GO:0008023 C transcription elongation factor complex GO:0008270 F zinc ion binding GO:0016567 P protein ubiquitination GO:0016874 F ligase activity GO:0030163 P protein catabolic process GO:0046872 F metal ion binding GO:0061630 F ubiquitin protein ligase activity GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
9197	O_BomoSK18279_complete:A_BomoSK_comp14101_c0_seq6 253bp	Bomo_Chr14
9198	O_BomoSK1827_5prime_partial:A_BomoSK_comp4625_c0_seq1 631bp	Bomo_Chr23	DNA_sequence_from_clone_AEHM-28L23_[Operophtera_brumata]
9199	O_BomoSK18280_complete:A_BomoSK_comp14101_c0_seq6 184bp	Bomo_Chr14
9200	O_BomoSK18281_complete:A_BomoSK_comp14101_c0_seq6 116bp	Bomo_Chr14
9201	O_BomoSK18282_5prime_partial:A_BomoSK_comp14101_c0_seq6 115bp	Bomo_Chr14
9202	O_BomoSK18283_complete:A_BomoSK_comp14102_c0_seq1 348bp	Bomo_Scaf001		GO:0003723 F RNA binding GO:0003735 F structural constituent of ribosome GO:0005739 C mitochondrion GO:0005743 C mitochondrial inner membrane GO:0005840 C ribosome GO:0006412 P translation GO:0015934 C large ribosomal subunit GO:0030529 C ribonucleoprotein complex GO:0044822 F RNA binding GO:0070124 P mitochondrial translational initiation GO:0070125 P mitochondrial translational elongation
9203	O_BomoSK18284_complete:A_BomoSK_comp14102_c0_seq1 121bp	Bomo_Scaf001
9204	O_BomoSK18285_5prime_partial:A_BomoSK_comp14103_c0_seq3 465bp	Bomo_Chr13		GO:0000346 C transcription export complex GO:0000347 C THO complex GO:0000445 C THO complex part of transcription export complex GO:0000784 C chromosome, telomeric region GO:0000902 P cell morphogenesis GO:0001824 P blastocyst development GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006397 P mRNA processing GO:0006406 P mRNA export from nucleus GO:0006810 P transport GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0010793 P regulation of mRNA export from nucleus GO:0016607 C nuclear speck GO:0016973 P poly(A)+ mRNA export from nucleus GO:0017145 P stem cell division GO:0046784 P viral mRNA export from host cell nucleus GO:0048666 P neuron development GO:0048699 P generation of neurons GO:0051028 P mRNA transport
9205	O_BomoSK18286_3prime_partial:A_BomoSK_comp14103_c0_seq3 152bp	Bomo_Chr13
9206	O_BomoSK18287_complete:A_BomoSK_comp14103_c0_seq5 117bp	Bomo_Chr13
9207	O_BomoSK18288_5prime_partial:A_BomoSK_comp14103_c0_seq6 468bp	Bomo_Chr13		GO:0000346 C transcription export complex GO:0000347 C THO complex GO:0000445 C THO complex part of transcription export complex GO:0000784 C chromosome, telomeric region GO:0000902 P cell morphogenesis GO:0001824 P blastocyst development GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006397 P mRNA processing GO:0006406 P mRNA export from nucleus GO:0006810 P transport GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0010793 P regulation of mRNA export from nucleus GO:0016607 C nuclear speck GO:0016973 P poly(A)+ mRNA export from nucleus GO:0017145 P stem cell division GO:0046784 P viral mRNA export from host cell nucleus GO:0048666 P neuron development GO:0048699 P generation of neurons GO:0051028 P mRNA transport
9208	O_BomoSK18289_3prime_partial:A_BomoSK_comp14103_c0_seq6 152bp	Bomo_Chr13
9209	O_BomoSK1828_complete:A_BomoSK_comp4625_c0_seq1 179bp	Bomo_Chr23	putative_transcriptional_regulator,_TetR_family_[Bradyrhizobium_sp._ORS_285]
9210	O_BomoSK18290_5prime_partial:A_BomoSK_comp14103_c0_seq7 382bp	Bomo_Chr13		GO:0000346 C transcription export complex GO:0000347 C THO complex GO:0000445 C THO complex part of transcription export complex GO:0000784 C chromosome, telomeric region GO:0000902 P cell morphogenesis GO:0001824 P blastocyst development GO:0003723 F RNA binding GO:0003729 F mRNA binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0006397 P mRNA processing GO:0006406 P mRNA export from nucleus GO:0006810 P transport GO:0008380 P RNA splicing GO:0010468 P regulation of gene expression GO:0010793 P regulation of mRNA export from nucleus GO:0016607 C nuclear speck GO:0016973 P poly(A)+ mRNA export from nucleus GO:0017145 P stem cell division GO:0046784 P viral mRNA export from host cell nucleus GO:0048666 P neuron development GO:0048699 P generation of neurons GO:0051028 P mRNA transport