SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9151 O_BomoSK18237_complete:A_BomoSK_comp14093_c0_seq11
121bp
9152 O_BomoSK18238_complete:A_BomoSK_comp14095_c0_seq1
1305bp
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000723 P telomere maintenance
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0000790 C chromatin
GO:0000793 C condensed chromosome
GO:0000794 C condensed nuclear chromosome
GO:0002168 P instar larval development
GO:0003690 F double-stranded DNA binding
GO:0003691 F double-stranded telomeric DNA binding
GO:0004003 F DNA helicase activity
GO:0004017 F adenylate kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007004 P telomere maintenance via telomerase
GO:0007049 P cell cycle
GO:0007131 P reciprocal meiotic recombination
GO:0008104 P protein localization
GO:0008408 F 3'-5' exonuclease activity
GO:0016233 P telomere capping
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030870 C Mre11 complex
GO:0032508 P DNA duplex unwinding
GO:0035861 C site of double-strand break
GO:0043047 F single-stranded telomeric DNA binding
GO:0046872 F metal ion binding
GO:0046939 P nucleotide phosphorylation
GO:0051276 P chromosome organization
GO:0051321 P meiotic cell cycle
GO:0051880 F G-quadruplex DNA binding
GO:0070192 P chromosome organization involved in meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
9153 O_BomoSK18239_complete:A_BomoSK_comp14096_c0_seq1
292bp
GO:0001501 P skeletal system development
GO:0001654 P eye development
GO:0002102 C podosome
GO:0005737 C cytoplasm
GO:0006801 P superoxide metabolic process
GO:0007507 P heart development
GO:0010314 F phosphatidylinositol-5-phosphate binding
GO:0022617 P extracellular matrix disassembly
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0035091 F phosphatidylinositol binding
GO:0042169 F SH2 domain binding
GO:0042995 C cell projection
GO:0045600 P positive regulation of fat cell differentiation
GO:0060348 P bone development
GO:0060612 P adipose tissue development
GO:0070273 F phosphatidylinositol-4-phosphate binding
GO:0071800 P podosome assembly
GO:0072657 P protein localization to membrane
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
9154 O_BomoSK1823_5prime_partial:A_BomoSK_comp4621_c0_seq1
109bp
 PREDICTED:_poly(ADP-ribose)_glycohydrolase_[Bombyx_mori]
GO:0004649 F poly(ADP-ribose) glycohydrolase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005975 P carbohydrate metabolic process
GO:0006342 P heterochromatin assembly
GO:0006909 P phagocytosis
GO:0009408 P response to heat
GO:0016787 F hydrolase activity
GO:0030576 P Cajal body organization
GO:0035065 P regulation of histone acetylation
GO:0036099 P female germ-line stem cell population maintenance
GO:0043484 P regulation of RNA splicing
GO:0051457 P maintenance of protein location in nucleus
9155 O_BomoSK18240_complete:A_BomoSK_comp14096_c0_seq2
274bp
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005739 C mitochondrion
GO:0005763 C mitochondrial small ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
GO:0040008 P regulation of growth
9156 O_BomoSK18241_3prime_partial:A_BomoSK_comp14096_c0_seq3
303bp
GO:0001501 P skeletal system development
GO:0001654 P eye development
GO:0002102 C podosome
GO:0005737 C cytoplasm
GO:0006801 P superoxide metabolic process
GO:0007507 P heart development
GO:0010314 F phosphatidylinositol-5-phosphate binding
GO:0022617 P extracellular matrix disassembly
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0035091 F phosphatidylinositol binding
GO:0042169 F SH2 domain binding
GO:0042995 C cell projection
GO:0045600 P positive regulation of fat cell differentiation
GO:0060348 P bone development
GO:0060612 P adipose tissue development
GO:0070273 F phosphatidylinositol-4-phosphate binding
GO:0071800 P podosome assembly
GO:0072657 P protein localization to membrane
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
9157 O_BomoSK18242_complete:A_BomoSK_comp14097_c0_seq3
235bp
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
9158 O_BomoSK18243_complete:A_BomoSK_comp14098_c0_seq1
887bp
9159 O_BomoSK18244_complete:A_BomoSK_comp14098_c0_seq1
268bp
9160 O_BomoSK18245_complete:A_BomoSK_comp14098_c0_seq1
132bp
9161 O_BomoSK18246_complete:A_BomoSK_comp14098_c0_seq1
117bp
9162 O_BomoSK18247_complete:A_BomoSK_comp14099_c0_seq1
125bp
GO:0016020 C membrane
GO:0016021 C integral component of membrane
9163 O_BomoSK18248_complete:A_BomoSK_comp14099_c0_seq2
121bp
9164 O_BomoSK18249_complete:A_BomoSK_comp14100_c0_seq1
300bp
GO:0003824 F catalytic activity
GO:0005739 C mitochondrion
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
9165 O_BomoSK1824_5prime_partial:A_BomoSK_comp4621_c0_seq2
233bp
 PREDICTED:_poly(ADP-ribose)_glycohydrolase_[Bombyx_mori]
GO:0004649 F poly(ADP-ribose) glycohydrolase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005975 P carbohydrate metabolic process
GO:0006342 P heterochromatin assembly
GO:0006909 P phagocytosis
GO:0009408 P response to heat
GO:0016787 F hydrolase activity
GO:0030576 P Cajal body organization
GO:0035065 P regulation of histone acetylation
GO:0036099 P female germ-line stem cell population maintenance
GO:0043484 P regulation of RNA splicing
GO:0051457 P maintenance of protein location in nucleus
9166 O_BomoSK18250_complete:A_BomoSK_comp14100_c0_seq1
177bp
9167 O_BomoSK18251_complete:A_BomoSK_comp14100_c0_seq2
255bp
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
9168 O_BomoSK18252_complete:A_BomoSK_comp14100_c0_seq2
169bp
9169 O_BomoSK18253_3prime_partial:A_BomoSK_comp14101_c0_seq1
591bp
GO:0000151 C ubiquitin ligase complex
GO:0005737 C cytoplasm
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008023 C transcription elongation factor complex
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
9170 O_BomoSK18254_complete:A_BomoSK_comp14101_c0_seq1
253bp
9171 O_BomoSK18255_complete:A_BomoSK_comp14101_c0_seq1
184bp
9172 O_BomoSK18256_complete:A_BomoSK_comp14101_c0_seq1
116bp
9173 O_BomoSK18257_5prime_partial:A_BomoSK_comp14101_c0_seq1
115bp
9174 O_BomoSK18258_3prime_partial:A_BomoSK_comp14101_c0_seq2
608bp
GO:0000151 C ubiquitin ligase complex
GO:0005737 C cytoplasm
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008023 C transcription elongation factor complex
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
9175 O_BomoSK18259_complete:A_BomoSK_comp14101_c0_seq2
260bp
9176 O_BomoSK1825_3prime_partial:A_BomoSK_comp4622_c0_seq1
398bp
 PREDICTED:_nuclear_factor_of_activated_T-cells_5_isoform_X1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001816 P cytokine production
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006970 P response to osmotic stress
GO:0007165 P signal transduction
GO:0007588 P excretion
GO:0010628 P positive regulation of gene expression
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0070884 P regulation of calcineurin-NFAT signaling cascade
9177 O_BomoSK18260_complete:A_BomoSK_comp14101_c0_seq2
191bp
9178 O_BomoSK18261_complete:A_BomoSK_comp14101_c0_seq2
116bp
9179 O_BomoSK18262_5prime_partial:A_BomoSK_comp14101_c0_seq2
115bp
9180 O_BomoSK18263_3prime_partial:A_BomoSK_comp14101_c0_seq3
601bp
GO:0000151 C ubiquitin ligase complex
GO:0005737 C cytoplasm
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0008023 C transcription elongation factor complex
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
previous next from show/33939

- SilkBase 1999-2023 -