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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8581 O_BomoSK17724_complete:A_BomoSK_comp14051_c0_seq16
109bp
8582 O_BomoSK17725_complete:A_BomoSK_comp14051_c0_seq16
107bp
8583 O_BomoSK17726_complete:A_BomoSK_comp14051_c0_seq16
104bp
8584 O_BomoSK17727_3prime_partial:A_BomoSK_comp14051_c0_seq17
228bp
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0007399 P nervous system development
GO:0008080 F N-acetyltransferase activity
GO:0008152 P metabolic process
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
8585 O_BomoSK17728_5prime_partial:A_BomoSK_comp14051_c0_seq17
218bp
8586 O_BomoSK17729_complete:A_BomoSK_comp14051_c0_seq17
104bp
8587 O_BomoSK1772_5prime_partial:A_BomoSK_comp4575_c0_seq1
405bp
 PREDICTED:_2-phosphoxylose_phosphatase_1_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0003993 F acid phosphatase activity
GO:0005794 C Golgi apparatus
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0010909 P positive regulation of heparan sulfate proteoglycan biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0050650 P chondroitin sulfate proteoglycan biosynthetic process
8588 O_BomoSK17730_complete:A_BomoSK_comp14051_c0_seq18
161bp
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007286 P spermatid development
GO:0007399 P nervous system development
GO:0007420 P brain development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
8589 O_BomoSK17731_complete:A_BomoSK_comp14051_c0_seq18
109bp
8590 O_BomoSK17732_complete:A_BomoSK_comp14051_c0_seq19
137bp
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0007399 P nervous system development
GO:0008080 F N-acetyltransferase activity
GO:0008152 P metabolic process
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
8591 O_BomoSK17733_3prime_partial:A_BomoSK_comp14051_c0_seq20
228bp
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0007399 P nervous system development
GO:0008080 F N-acetyltransferase activity
GO:0008152 P metabolic process
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
8592 O_BomoSK17734_5prime_partial:A_BomoSK_comp14051_c0_seq20
218bp
8593 O_BomoSK17735_complete:A_BomoSK_comp14051_c0_seq20
104bp
8594 O_BomoSK17736_3prime_partial:A_BomoSK_comp14052_c0_seq2
123bp
8595 O_BomoSK17737_complete:A_BomoSK_comp14052_c0_seq3
419bp
GO:0000012 P single strand break repair
GO:0000166 F nucleotide binding
GO:0000793 C condensed chromosome
GO:0001701 P in utero embryonic development
GO:0002328 P pro-B cell differentiation
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006266 P DNA ligation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007417 P central nervous system development
GO:0008022 F protein C-terminus binding
GO:0008283 P cell population proliferation
GO:0010165 P response to X-ray
GO:0010212 P response to ionizing radiation
GO:0010332 P response to gamma radiation
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0033077 P T cell differentiation in thymus
GO:0033151 P V(D)J recombination
GO:0033152 P immunoglobulin V(D)J recombination
GO:0033153 P T cell receptor V(D)J recombination
GO:0035019 P somatic stem cell population maintenance
GO:0043524 P negative regulation of neuron apoptotic process
GO:0045190 P isotype switching
GO:0046872 F metal ion binding
GO:0048146 P positive regulation of fibroblast proliferation
GO:0050769 P positive regulation of neurogenesis
GO:0051102 P DNA ligation involved in DNA recombination
GO:0051103 P DNA ligation involved in DNA repair
GO:0051276 P chromosome organization
GO:0051301 P cell division
GO:0051402 P neuron apoptotic process
GO:0070419 C nonhomologous end joining complex
GO:0071285 P cellular response to lithium ion
GO:0071897 P DNA biosynthetic process
GO:0097680 P double-strand break repair via classical nonhomologous end joining
GO:2001252 P positive regulation of chromosome organization
8596 O_BomoSK17738_3prime_partial:A_BomoSK_comp14052_c0_seq4
294bp
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0033152 P immunoglobulin V(D)J recombination
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070419 C nonhomologous end joining complex
GO:0071897 P DNA biosynthetic process
8597 O_BomoSK17739_3prime_partial:A_BomoSK_comp14052_c0_seq6
717bp
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005958 C DNA-dependent protein kinase-DNA ligase 4 complex
GO:0006260 P DNA replication
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016874 F ligase activity
GO:0032807 C DNA ligase IV complex
GO:0033152 P immunoglobulin V(D)J recombination
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070419 C nonhomologous end joining complex
GO:0071897 P DNA biosynthetic process
8598 O_BomoSK1773_5prime_partial:A_BomoSK_comp4575_c0_seq2
418bp
 Acid_phosphatase-like_protein_2_[Papilio_xuthus]
GO:0000139 C Golgi membrane
GO:0003993 F acid phosphatase activity
GO:0005794 C Golgi apparatus
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0010909 P positive regulation of heparan sulfate proteoglycan biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0050650 P chondroitin sulfate proteoglycan biosynthetic process
8599 O_BomoSK17740_5prime_partial:A_BomoSK_comp14053_c0_seq2
502bp
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006664 P glycolipid metabolic process
GO:0046527 F glucosyltransferase activity
8600 O_BomoSK17741_complete:A_BomoSK_comp14053_c0_seq2
107bp
8601 O_BomoSK17742_complete:A_BomoSK_comp14053_c0_seq3
205bp
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006664 P glycolipid metabolic process
GO:0046527 F glucosyltransferase activity
8602 O_BomoSK17743_5prime_partial:A_BomoSK_comp14053_c0_seq3
107bp
8603 O_BomoSK17744_complete:A_BomoSK_comp14053_c0_seq3
106bp
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006664 P glycolipid metabolic process
GO:0046527 F glucosyltransferase activity
8604 O_BomoSK17745_complete:A_BomoSK_comp14053_c0_seq4
205bp
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006664 P glycolipid metabolic process
GO:0046527 F glucosyltransferase activity
8605 O_BomoSK17746_complete:A_BomoSK_comp14053_c0_seq4
143bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006664 P glycolipid metabolic process
GO:0008150 P biological_process
GO:0046527 F glucosyltransferase activity
8606 O_BomoSK17747_complete:A_BomoSK_comp14053_c0_seq4
107bp
8607 O_BomoSK17748_5prime_partial:A_BomoSK_comp14053_c0_seq4
107bp
8608 O_BomoSK17749_complete:A_BomoSK_comp14053_c0_seq5
293bp
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006664 P glycolipid metabolic process
GO:0046527 F glucosyltransferase activity
8609 O_BomoSK1774_5prime_partial:A_BomoSK_comp4576_c0_seq1
371bp
 PREDICTED:_uncharacterized_protein_LOC105841963_[Bombyx_mori]
8610 O_BomoSK17750_complete:A_BomoSK_comp14053_c0_seq6
330bp
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006664 P glycolipid metabolic process
GO:0046527 F glucosyltransferase activity
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