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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8521 O_BomoSK17670_complete:A_BomoSK_comp14048_c0_seq3
412bp
GO:0005280 F amino acid:proton symporter activity
GO:0005302 F L-tyrosine transmembrane transporter activity
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015078 F proton transmembrane transporter activity
GO:0015175 F neutral amino acid transmembrane transporter activity
GO:0015180 F L-alanine transmembrane transporter activity
GO:0015187 F glycine transmembrane transporter activity
GO:0015193 F L-proline transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015804 P neutral amino acid transport
GO:0015808 P L-alanine transport
GO:0015816 P glycine transport
GO:0015824 P proline transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035524 P proline transmembrane transport
GO:1902600 P proton transmembrane transport
8522 O_BomoSK17671_complete:A_BomoSK_comp14048_c0_seq4
206bp
GO:0005280 F amino acid:proton symporter activity
GO:0005302 F L-tyrosine transmembrane transporter activity
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015078 F proton transmembrane transporter activity
GO:0015175 F neutral amino acid transmembrane transporter activity
GO:0015180 F L-alanine transmembrane transporter activity
GO:0015187 F glycine transmembrane transporter activity
GO:0015193 F L-proline transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015804 P neutral amino acid transport
GO:0015808 P L-alanine transport
GO:0015816 P glycine transport
GO:0015824 P proline transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035524 P proline transmembrane transport
GO:1902600 P proton transmembrane transport
8523 O_BomoSK17672_complete:A_BomoSK_comp14048_c0_seq5
253bp
GO:0005280 F amino acid:proton symporter activity
GO:0005302 F L-tyrosine transmembrane transporter activity
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015078 F proton transmembrane transporter activity
GO:0015175 F neutral amino acid transmembrane transporter activity
GO:0015180 F L-alanine transmembrane transporter activity
GO:0015187 F glycine transmembrane transporter activity
GO:0015193 F L-proline transmembrane transporter activity
GO:0015293 F symporter activity
GO:0015804 P neutral amino acid transport
GO:0015808 P L-alanine transport
GO:0015816 P glycine transport
GO:0015824 P proline transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0035524 P proline transmembrane transport
GO:1902600 P proton transmembrane transport
8524 O_BomoSK17673_5prime_partial:A_BomoSK_comp14049_c0_seq1
246bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0030154 P cell differentiation
GO:0030318 P melanocyte differentiation
8525 O_BomoSK17674_5prime_partial:A_BomoSK_comp14050_c0_seq2
126bp
8526 O_BomoSK17675_complete:A_BomoSK_comp14051_c0_seq1
231bp
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007286 P spermatid development
GO:0007399 P nervous system development
GO:0007420 P brain development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
8527 O_BomoSK17676_complete:A_BomoSK_comp14051_c0_seq1
109bp
8528 O_BomoSK17677_complete:A_BomoSK_comp14051_c0_seq2
246bp
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007286 P spermatid development
GO:0007399 P nervous system development
GO:0007420 P brain development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
8529 O_BomoSK17678_complete:A_BomoSK_comp14051_c0_seq2
109bp
8530 O_BomoSK17679_complete:A_BomoSK_comp14051_c0_seq2
107bp
8531 O_BomoSK1767_3prime_partial:A_BomoSK_comp4568_c0_seq1
428bp
 PREDICTED:_uncharacterized_protein_LOC101742588_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
8532 O_BomoSK17680_3prime_partial:A_BomoSK_comp14051_c0_seq3
228bp
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0007399 P nervous system development
GO:0008080 F N-acetyltransferase activity
GO:0008152 P metabolic process
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
8533 O_BomoSK17681_5prime_partial:A_BomoSK_comp14051_c0_seq3
218bp
8534 O_BomoSK17682_complete:A_BomoSK_comp14051_c0_seq3
203bp
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007286 P spermatid development
GO:0007399 P nervous system development
GO:0007420 P brain development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
8535 O_BomoSK17683_complete:A_BomoSK_comp14051_c0_seq3
109bp
8536 O_BomoSK17684_complete:A_BomoSK_comp14051_c0_seq3
104bp
8537 O_BomoSK17685_complete:A_BomoSK_comp14051_c0_seq4
183bp
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007286 P spermatid development
GO:0007399 P nervous system development
GO:0007420 P brain development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
8538 O_BomoSK17686_3prime_partial:A_BomoSK_comp14051_c0_seq5
228bp
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0007399 P nervous system development
GO:0008080 F N-acetyltransferase activity
GO:0008152 P metabolic process
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
8539 O_BomoSK17687_5prime_partial:A_BomoSK_comp14051_c0_seq5
218bp
8540 O_BomoSK17688_complete:A_BomoSK_comp14051_c0_seq5
104bp
8541 O_BomoSK17689_3prime_partial:A_BomoSK_comp14051_c0_seq6
228bp
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0007399 P nervous system development
GO:0008080 F N-acetyltransferase activity
GO:0008152 P metabolic process
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
8542 O_BomoSK1768_5prime_partial:A_BomoSK_comp4568_c0_seq1
107bp
 hypothetical_protein_HYDPIDRAFT_31786_[Hydnomerulius_pinastri_MD-312]
8543 O_BomoSK17690_complete:A_BomoSK_comp14051_c0_seq6
227bp
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007286 P spermatid development
GO:0007399 P nervous system development
GO:0007420 P brain development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
8544 O_BomoSK17691_5prime_partial:A_BomoSK_comp14051_c0_seq6
218bp
8545 O_BomoSK17692_complete:A_BomoSK_comp14051_c0_seq6
109bp
8546 O_BomoSK17693_complete:A_BomoSK_comp14051_c0_seq6
104bp
8547 O_BomoSK17694_3prime_partial:A_BomoSK_comp14051_c0_seq8
228bp
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0007399 P nervous system development
GO:0008080 F N-acetyltransferase activity
GO:0008152 P metabolic process
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0016922 F nuclear receptor binding
GO:0017053 C transcription repressor complex
GO:0022008 P neurogenesis
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
8548 O_BomoSK17695_5prime_partial:A_BomoSK_comp14051_c0_seq8
218bp
8549 O_BomoSK17696_complete:A_BomoSK_comp14051_c0_seq8
179bp
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0007286 P spermatid development
GO:0007399 P nervous system development
GO:0007420 P brain development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
8550 O_BomoSK17697_complete:A_BomoSK_comp14051_c0_seq8
104bp
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