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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7351 O_BomoSK16617_5prime_partial:A_BomoSK_comp13897_c0_seq2
131bp
7352 O_BomoSK16618_complete:A_BomoSK_comp13898_c1_seq2
100bp
7353 O_BomoSK16619_complete:A_BomoSK_comp13898_c1_seq3
201bp
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0030173 C integral component of Golgi membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0097020 F COPII receptor activity
7354 O_BomoSK1661_complete:A_BomoSK_comp4475_c0_seq1
115bp
 hypothetical_protein_[Microbacterium_sp._Leaf288]
7355 O_BomoSK16620_complete:A_BomoSK_comp13898_c1_seq3
106bp
7356 O_BomoSK16621_complete:A_BomoSK_comp13898_c1_seq5
184bp
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0030173 C integral component of Golgi membrane
GO:0030176 C integral component of endoplasmic reticulum membrane
GO:0097020 F COPII receptor activity
7357 O_BomoSK16622_complete:A_BomoSK_comp13898_c1_seq5
106bp
7358 O_BomoSK16623_complete:A_BomoSK_comp13899_c0_seq1
1250bp
GO:0005737 C cytoplasm
7359 O_BomoSK16624_complete:A_BomoSK_comp13899_c0_seq1
123bp
7360 O_BomoSK16625_complete:A_BomoSK_comp13899_c0_seq1
106bp
7361 O_BomoSK16626_5prime_partial:A_BomoSK_comp13899_c0_seq2
706bp
GO:0005737 C cytoplasm
7362 O_BomoSK16627_complete:A_BomoSK_comp13899_c0_seq3
1174bp
GO:0005737 C cytoplasm
7363 O_BomoSK16628_complete:A_BomoSK_comp13899_c0_seq3
123bp
7364 O_BomoSK16629_complete:A_BomoSK_comp13899_c0_seq3
106bp
7365 O_BomoSK1662_3prime_partial:A_BomoSK_comp4477_c0_seq1
734bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_36_isoform_X2_[Papilio_machaon]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030718 P germ-line stem cell population maintenance
GO:0035019 P somatic stem cell population maintenance
GO:0036459 F thiol-dependent deubiquitinase
7366 O_BomoSK16630_5prime_partial:A_BomoSK_comp13900_c0_seq1
172bp
GO:0004857 F enzyme inhibitor activity
GO:0005615 C extracellular space
GO:0008191 F metalloendopeptidase inhibitor activity
GO:0009653 P anatomical structure morphogenesis
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0030198 P extracellular matrix organization
GO:0030414 F peptidase inhibitor activity
GO:0042060 P wound healing
7367 O_BomoSK16631_complete:A_BomoSK_comp13900_c0_seq1
171bp
7368 O_BomoSK16632_internal:A_BomoSK_comp13900_c0_seq3
109bp
7369 O_BomoSK16633_5prime_partial:A_BomoSK_comp13901_c0_seq1
275bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001954 P positive regulation of cell-matrix adhesion
GO:0002221 P pattern recognition receptor signaling pathway
GO:0005041 F low-density lipoprotein particle receptor activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006898 P receptor-mediated endocytosis
GO:0006910 P phagocytosis, recognition
GO:0006955 P immune response
GO:0007155 P cell adhesion
GO:0007166 P cell surface receptor signaling pathway
GO:0007204 P positive regulation of cytosolic calcium ion concentration
GO:0007263 P nitric oxide mediated signal transduction
GO:0008035 F high-density lipoprotein particle binding
GO:0008289 F lipid binding
GO:0009897 C external side of plasma membrane
GO:0009986 C cell surface
GO:0010629 P negative regulation of gene expression
GO:0010744 P positive regulation of macrophage derived foam cell differentiation
GO:0010886 P positive regulation of cholesterol storage
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0019915 P lipid storage
GO:0019934 P cGMP-mediated signaling
GO:0030169 F low-density lipoprotein particle binding
GO:0030194 P positive regulation of blood coagulation
GO:0030299 P intestinal cholesterol absorption
GO:0030301 P cholesterol transport
GO:0031526 C brush border membrane
GO:0031623 P receptor internalization
GO:0032735 P positive regulation of interleukin-12 production
GO:0032755 P positive regulation of interleukin-6 production
GO:0032760 P positive regulation of tumor necrosis factor production
GO:0033993 P response to lipid
GO:0034197 P triglyceride transport
GO:0034381 P plasma lipoprotein particle clearance
GO:0034383 P low-density lipoprotein particle clearance
GO:0035634 P response to stilbenoid
GO:0042953 P lipoprotein transport
GO:0042992 P obsolete negative regulation of transcription factor import into nucleus
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043277 P apoptotic cell clearance
GO:0043410 P positive regulation of MAPK cascade
GO:0043619 P regulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0044130 P obsolete negative regulation of growth of symbiont in host
GO:0044539 P long-chain fatty acid import into cell
GO:0045121 C membrane raft
GO:0045177 C apical part of cell
GO:0050702 P interleukin-1 beta production
GO:0050731 P positive regulation of peptidyl-tyrosine phosphorylation
GO:0050830 P defense response to Gram-positive bacterium
GO:0050892 P intestinal absorption
GO:0050909 P sensory perception of taste
GO:0055096 P low-density lipoprotein particle mediated signaling
GO:0060100 P positive regulation of phagocytosis, engulfment
GO:0060907 P positive regulation of macrophage cytokine production
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0070508 P cholesterol import
GO:0070542 P response to fatty acid
GO:0070543 P response to linoleic acid
GO:0070892 F lipoteichoic acid immune receptor activity
GO:0071221 P cellular response to bacterial lipopeptide
GO:0071222 P cellular response to lipopolysaccharide
GO:0071223 P cellular response to lipoteichoic acid
GO:0071404 P cellular response to low-density lipoprotein particle stimulus
GO:0071447 P cellular response to hydroperoxide
GO:0071726 P cellular response to diacyl bacterial lipopeptide
GO:0071813 F lipoprotein particle binding
GO:1900227 P positive regulation of NLRP3 inflammasome complex assembly
GO:1990000 P amyloid fibril formation
GO:2000121 P regulation of removal of superoxide radicals
GO:2000334 P positive regulation of blood microparticle formation
GO:2000379 P positive regulation of reactive oxygen species metabolic process
GO:2000505 P energy homeostasis
7370 O_BomoSK16634_internal:A_BomoSK_comp13901_c1_seq1
331bp
GO:0001530 F lipopolysaccharide binding
GO:0001875 F lipopolysaccharide immune receptor activity
GO:0001935 P endothelial cell proliferation
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005901 C caveola
GO:0006707 P cholesterol catabolic process
GO:0006898 P receptor-mediated endocytosis
GO:0008035 F high-density lipoprotein particle binding
GO:0009986 C cell surface
GO:0010867 P positive regulation of triglyceride biosynthetic process
GO:0010886 P positive regulation of cholesterol storage
GO:0010899 P regulation of phosphatidylcholine catabolic process
GO:0015914 P phospholipid transport
GO:0015920 P lipopolysaccharide transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030169 F low-density lipoprotein particle binding
GO:0030301 P cholesterol transport
GO:0031663 P lipopolysaccharide-mediated signaling pathway
GO:0032497 P detection of lipopolysaccharide
GO:0033344 P cholesterol efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034383 P low-density lipoprotein particle clearance
GO:0034384 P high-density lipoprotein particle clearance
GO:0035461 P vitamin transmembrane transport
GO:0042632 P cholesterol homeostasis
GO:0043231 C intracellular membrane-bounded organelle
GO:0043534 P blood vessel endothelial cell migration
GO:0043654 P recognition of apoptotic cell
GO:0043691 P reverse cholesterol transport
GO:0044406 P adhesion of symbiont to host
GO:0050892 P intestinal absorption
GO:0051000 P positive regulation of nitric-oxide synthase activity
GO:0070062 C extracellular exosome
GO:0070328 P triglyceride homeostasis
GO:0070506 F high-density lipoprotein particle receptor activity
GO:0070508 P cholesterol import
7371 O_BomoSK16635_complete:A_BomoSK_comp13903_c0_seq1
802bp
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030490 P maturation of SSU-rRNA
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
7372 O_BomoSK16636_5prime_partial:A_BomoSK_comp13903_c0_seq1
255bp
7373 O_BomoSK16637_complete:A_BomoSK_comp13903_c0_seq1
118bp
7374 O_BomoSK16638_5prime_partial:A_BomoSK_comp13904_c0_seq3
251bp
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
7375 O_BomoSK16639_complete:A_BomoSK_comp13905_c1_seq1
223bp
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0031489 F myosin V binding
GO:0031982 C vesicle
GO:0043005 C neuron projection
GO:0050808 P synapse organization
7376 O_BomoSK1663_5prime_partial:A_BomoSK_comp4477_c0_seq1
117bp
7377 O_BomoSK16640_complete:A_BomoSK_comp13906_c0_seq1
1787bp
GO:0005070 F obsolete SH3/SH2 adaptor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0006897 P endocytosis
GO:0009967 P positive regulation of signal transduction
GO:0030154 P cell differentiation
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1903861 P positive regulation of dendrite extension
7378 O_BomoSK16641_complete:A_BomoSK_comp13906_c0_seq2
1787bp
GO:0005070 F obsolete SH3/SH2 adaptor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0006897 P endocytosis
GO:0009967 P positive regulation of signal transduction
GO:0030154 P cell differentiation
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1903861 P positive regulation of dendrite extension
7379 O_BomoSK16642_complete:A_BomoSK_comp13906_c0_seq3
1787bp
GO:0005070 F obsolete SH3/SH2 adaptor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0006897 P endocytosis
GO:0009967 P positive regulation of signal transduction
GO:0030154 P cell differentiation
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1903861 P positive regulation of dendrite extension
7380 O_BomoSK16643_complete:A_BomoSK_comp13906_c0_seq4
1787bp
GO:0005070 F obsolete SH3/SH2 adaptor activity
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0006897 P endocytosis
GO:0009967 P positive regulation of signal transduction
GO:0030154 P cell differentiation
GO:0035023 P regulation of Rho protein signal transduction
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1903861 P positive regulation of dendrite extension
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