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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7321 O_BomoSK16590_complete:A_BomoSK_comp13895_c0_seq1
102bp
7322 O_BomoSK16591_5prime_partial:A_BomoSK_comp13895_c0_seq2
102bp
7323 O_BomoSK16592_complete:A_BomoSK_comp13896_c0_seq1
660bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001503 P ossification
GO:0001779 P natural killer cell differentiation
GO:0001889 P liver development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016605 C PML body
GO:0017053 C transcription repressor complex
GO:0030183 P B cell differentiation
GO:0030217 P T cell differentiation
GO:0030218 P erythrocyte differentiation
GO:0030219 P megakaryocyte differentiation
GO:0030224 P monocyte differentiation
GO:0030324 P lung development
GO:0030851 P granulocyte differentiation
GO:0043353 P enucleate erythrocyte differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048596 P embryonic camera-type eye morphogenesis
GO:0048706 P embryonic skeletal system development
GO:0060216 P definitive hemopoiesis
7324 O_BomoSK16593_complete:A_BomoSK_comp13896_c0_seq1
124bp
7325 O_BomoSK16594_complete:A_BomoSK_comp13896_c0_seq1
110bp
7326 O_BomoSK16595_complete:A_BomoSK_comp13896_c0_seq1
103bp
7327 O_BomoSK16596_complete:A_BomoSK_comp13896_c0_seq2
225bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001503 P ossification
GO:0001779 P natural killer cell differentiation
GO:0001889 P liver development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016605 C PML body
GO:0017053 C transcription repressor complex
GO:0030183 P B cell differentiation
GO:0030217 P T cell differentiation
GO:0030218 P erythrocyte differentiation
GO:0030219 P megakaryocyte differentiation
GO:0030224 P monocyte differentiation
GO:0030324 P lung development
GO:0030851 P granulocyte differentiation
GO:0043353 P enucleate erythrocyte differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048596 P embryonic camera-type eye morphogenesis
GO:0048706 P embryonic skeletal system development
GO:0060216 P definitive hemopoiesis
7328 O_BomoSK16597_complete:A_BomoSK_comp13896_c0_seq2
124bp
7329 O_BomoSK16598_complete:A_BomoSK_comp13896_c0_seq2
110bp
7330 O_BomoSK16599_5prime_partial:A_BomoSK_comp13896_c0_seq3
274bp
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008016 P regulation of heart contraction
GO:0015630 C microtubule cytoskeleton
GO:0045171 C intercellular bridge
GO:0046872 F metal ion binding
7331 O_BomoSK1659_complete:A_BomoSK_comp4472_c0_seq1
311bp
 rRNA_processing_protein_Ebp2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030687 C preribosome, large subunit precursor
GO:0034399 C nuclear periphery
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
7332 O_BomoSK165_5prime_partial:A_BomoSK_comp538_c0_seq1
110bp
7333 O_BomoSK16600_complete:A_BomoSK_comp13896_c0_seq3
110bp
7334 O_BomoSK16601_complete:A_BomoSK_comp13896_c0_seq4
225bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001503 P ossification
GO:0001779 P natural killer cell differentiation
GO:0001889 P liver development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016605 C PML body
GO:0017053 C transcription repressor complex
GO:0030183 P B cell differentiation
GO:0030217 P T cell differentiation
GO:0030218 P erythrocyte differentiation
GO:0030219 P megakaryocyte differentiation
GO:0030224 P monocyte differentiation
GO:0030324 P lung development
GO:0030851 P granulocyte differentiation
GO:0043353 P enucleate erythrocyte differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048596 P embryonic camera-type eye morphogenesis
GO:0048706 P embryonic skeletal system development
GO:0060216 P definitive hemopoiesis
7335 O_BomoSK16602_complete:A_BomoSK_comp13896_c0_seq4
110bp
7336 O_BomoSK16603_complete:A_BomoSK_comp13896_c0_seq5
660bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001503 P ossification
GO:0001779 P natural killer cell differentiation
GO:0001889 P liver development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016605 C PML body
GO:0017053 C transcription repressor complex
GO:0030183 P B cell differentiation
GO:0030217 P T cell differentiation
GO:0030218 P erythrocyte differentiation
GO:0030219 P megakaryocyte differentiation
GO:0030224 P monocyte differentiation
GO:0030324 P lung development
GO:0030851 P granulocyte differentiation
GO:0043353 P enucleate erythrocyte differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048596 P embryonic camera-type eye morphogenesis
GO:0048706 P embryonic skeletal system development
GO:0060216 P definitive hemopoiesis
7337 O_BomoSK16604_complete:A_BomoSK_comp13896_c0_seq5
110bp
7338 O_BomoSK16605_complete:A_BomoSK_comp13896_c0_seq5
103bp
7339 O_BomoSK16606_5prime_partial:A_BomoSK_comp13896_c0_seq6
274bp
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008016 P regulation of heart contraction
GO:0015630 C microtubule cytoskeleton
GO:0045171 C intercellular bridge
GO:0046872 F metal ion binding
7340 O_BomoSK16607_complete:A_BomoSK_comp13896_c0_seq6
124bp
7341 O_BomoSK16608_complete:A_BomoSK_comp13896_c0_seq6
110bp
7342 O_BomoSK16609_complete:A_BomoSK_comp13896_c0_seq7
225bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001503 P ossification
GO:0001779 P natural killer cell differentiation
GO:0001889 P liver development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016605 C PML body
GO:0017053 C transcription repressor complex
GO:0030183 P B cell differentiation
GO:0030217 P T cell differentiation
GO:0030218 P erythrocyte differentiation
GO:0030219 P megakaryocyte differentiation
GO:0030224 P monocyte differentiation
GO:0030324 P lung development
GO:0030851 P granulocyte differentiation
GO:0043353 P enucleate erythrocyte differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048596 P embryonic camera-type eye morphogenesis
GO:0048706 P embryonic skeletal system development
GO:0060216 P definitive hemopoiesis
7343 O_BomoSK1660_complete:A_BomoSK_comp4473_c0_seq2
151bp
 translation_initiation_factor_1a_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005575 C cellular_component
GO:0006413 P translational initiation
GO:0008150 P biological_process
7344 O_BomoSK16610_complete:A_BomoSK_comp13896_c0_seq7
110bp
7345 O_BomoSK16611_5prime_partial:A_BomoSK_comp13896_c0_seq8
274bp
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0008016 P regulation of heart contraction
GO:0015630 C microtubule cytoskeleton
GO:0045171 C intercellular bridge
GO:0046872 F metal ion binding
7346 O_BomoSK16612_complete:A_BomoSK_comp13896_c0_seq8
110bp
7347 O_BomoSK16613_complete:A_BomoSK_comp13896_c0_seq9
660bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000987 F cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001503 P ossification
GO:0001779 P natural killer cell differentiation
GO:0001889 P liver development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016605 C PML body
GO:0017053 C transcription repressor complex
GO:0030183 P B cell differentiation
GO:0030217 P T cell differentiation
GO:0030218 P erythrocyte differentiation
GO:0030219 P megakaryocyte differentiation
GO:0030224 P monocyte differentiation
GO:0030324 P lung development
GO:0030851 P granulocyte differentiation
GO:0043353 P enucleate erythrocyte differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048596 P embryonic camera-type eye morphogenesis
GO:0048706 P embryonic skeletal system development
GO:0060216 P definitive hemopoiesis
7348 O_BomoSK16614_complete:A_BomoSK_comp13896_c0_seq9
110bp
7349 O_BomoSK16615_complete:A_BomoSK_comp13896_c0_seq9
103bp
7350 O_BomoSK16616_complete:A_BomoSK_comp13896_c2_seq1
103bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0030629 F U6 snRNA 3'-end binding
GO:0033962 P P-body assembly
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:1990726 C Lsm1-7-Pat1 complex
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