SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
721 O_BomoSK1064_complete:A_BomoSK_comp3848_c0_seq1
172bp
 PREDICTED:_uncharacterized_protein_LOC106719059_isoform_X1_[Papilio_machaon]
722 O_BomoSK10650_complete:A_BomoSK_comp12296_c0_seq2
265bp
 cAMP_responsive_element_binding_protein_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007528 P neuromuscular junction development
GO:0007611 P learning or memory
GO:0007616 P long-term memory
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0030431 P sleep
GO:0040040 P thermosensory behavior
GO:0043565 F sequence-specific DNA binding
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046983 F protein dimerization activity
GO:0072375 P medium-term memory
GO:2000253 P positive regulation of feeding behavior
723 O_BomoSK10651_complete:A_BomoSK_comp12296_c0_seq3
289bp
 PREDICTED:_cAMP_responsive_element_binding_protein_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007623 P circadian rhythm
GO:0030154 P cell differentiation
GO:0033762 P response to glucagon
GO:0043565 F sequence-specific DNA binding
GO:0045600 P positive regulation of fat cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046889 P positive regulation of lipid biosynthetic process
GO:0048511 P rhythmic process
GO:0050821 P protein stabilization
724 O_BomoSK10652_complete:A_BomoSK_comp12296_c0_seq4
285bp
 PREDICTED:_cAMP_responsive_element_binding_protein_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007623 P circadian rhythm
GO:0030154 P cell differentiation
GO:0033762 P response to glucagon
GO:0043565 F sequence-specific DNA binding
GO:0045600 P positive regulation of fat cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046889 P positive regulation of lipid biosynthetic process
GO:0048511 P rhythmic process
GO:0050821 P protein stabilization
725 O_BomoSK10653_complete:A_BomoSK_comp12297_c0_seq2
162bp
 Uncharacterised_protein_[Mycobacterium_tuberculosis]
726 O_BomoSK10654_complete:A_BomoSK_comp12297_c0_seq2
147bp
 PREDICTED:_acyl-CoA_synthetase_family_member_2,_mitochondrial_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016874 F ligase activity
727 O_BomoSK10655_5prime_partial:A_BomoSK_comp12297_c0_seq3
591bp
 PREDICTED:_acyl-CoA_synthetase_family_member_2,_mitochondrial-like_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016874 F ligase activity
728 O_BomoSK10656_complete:A_BomoSK_comp12297_c0_seq3
162bp
 Uncharacterised_protein_[Mycobacterium_tuberculosis]
729 O_BomoSK10657_complete:A_BomoSK_comp12299_c0_seq1
720bp
 PREDICTED:_centrosomin_[Papilio_machaon]
GO:0000132 P establishment of mitotic spindle orientation
GO:0000226 P microtubule cytoskeleton organization
GO:0000242 C pericentriolar material
GO:0000922 C spindle pole
GO:0001578 P microtubule bundle formation
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0007059 P chromosome segregation
GO:0007099 P centriole replication
GO:0007420 P brain development
GO:0008017 F microtubule binding
GO:0015631 F tubulin binding
GO:0019901 F protein kinase binding
GO:0022008 P neurogenesis
GO:0030054 C cell junction
GO:0031023 P microtubule organizing center organization
GO:0032403 F protein-containing complex binding
GO:0035371 C microtubule plus-end
GO:0044212 F transcription cis-regulatory region binding
GO:0045665 P negative regulation of neuron differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046600 P negative regulation of centriole replication
GO:0048471 C perinuclear region of cytoplasm
GO:0051297 P centrosome cycle
GO:0070062 C extracellular exosome
GO:0090231 P regulation of spindle checkpoint
GO:0097431 C mitotic spindle pole
730 O_BomoSK10658_complete:A_BomoSK_comp12300_c0_seq1
616bp
 PREDICTED:_host_cell_factor-like_isoform_X1_[Amyelois_transitella]
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0006338 P chromatin remodeling
GO:0007049 P cell cycle
GO:0016573 P histone acetylation
GO:0043966 P histone H3 acetylation
GO:0043967 P histone H4 acetylation
GO:0044665 C MLL1/2 complex
GO:0044666 C MLL3/4 complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045927 P positive regulation of growth
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
731 O_BomoSK10659_complete:A_BomoSK_comp12300_c0_seq1
112bp
732 O_BomoSK1065_complete:A_BomoSK_comp3848_c0_seq1
111bp
 diguanylate_cyclase_[Catenovulum_agarivorans]
733 O_BomoSK10660_complete:A_BomoSK_comp12300_c0_seq2
608bp
 PREDICTED:_host_cell_factor-like_[Papilio_xuthus]
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0006338 P chromatin remodeling
GO:0007049 P cell cycle
GO:0016573 P histone acetylation
GO:0043966 P histone H3 acetylation
GO:0043967 P histone H4 acetylation
GO:0044665 C MLL1/2 complex
GO:0044666 C MLL3/4 complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045927 P positive regulation of growth
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
734 O_BomoSK10661_complete:A_BomoSK_comp12300_c0_seq2
104bp
735 O_BomoSK10662_complete:A_BomoSK_comp12300_c0_seq3
616bp
 PREDICTED:_host_cell_factor-like_isoform_X1_[Amyelois_transitella]
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0006338 P chromatin remodeling
GO:0007049 P cell cycle
GO:0016573 P histone acetylation
GO:0043966 P histone H3 acetylation
GO:0043967 P histone H4 acetylation
GO:0044665 C MLL1/2 complex
GO:0044666 C MLL3/4 complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045927 P positive regulation of growth
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
736 O_BomoSK10663_complete:A_BomoSK_comp12300_c0_seq3
112bp
737 O_BomoSK10664_complete:A_BomoSK_comp12300_c0_seq4
608bp
 PREDICTED:_host_cell_factor-like_[Papilio_xuthus]
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0006338 P chromatin remodeling
GO:0007049 P cell cycle
GO:0016573 P histone acetylation
GO:0043966 P histone H3 acetylation
GO:0043967 P histone H4 acetylation
GO:0044665 C MLL1/2 complex
GO:0044666 C MLL3/4 complex
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045927 P positive regulation of growth
GO:0048188 C Set1C/COMPASS complex
GO:0051568 P histone H3-K4 methylation
738 O_BomoSK10665_complete:A_BomoSK_comp12300_c0_seq4
104bp
739 O_BomoSK10666_5prime_partial:A_BomoSK_comp12302_c0_seq1
125bp
 PREDICTED:_probable_dynactin_subunit_2_[Amyelois_transitella]
GO:0003774 F cytoskeletal motor activity
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005869 C dynactin complex
GO:0005874 C microtubule
GO:0007017 P microtubule-based process
GO:0007067 P mitotic cell cycle
GO:0008152 P metabolic process
GO:0008283 P cell population proliferation
GO:0016020 C membrane
GO:0030286 C dynein complex
GO:0031982 C vesicle
740 O_BomoSK10667_complete:A_BomoSK_comp12303_c0_seq1
398bp
 PREDICTED:_thioredoxin_domain-containing_protein_5_[Bombyx_mori]
GO:0003756 F protein disulfide isomerase activity
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006457 P protein folding
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
GO:0034976 P response to endoplasmic reticulum stress
GO:0043277 P apoptotic cell clearance
GO:0045454 P cell redox homeostasis
GO:0070062 C extracellular exosome
741 O_BomoSK10668_complete:A_BomoSK_comp12306_c0_seq1
540bp
 PREDICTED:_organic_cation_transporter_protein-like_[Papilio_xuthus]
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
742 O_BomoSK10669_complete:A_BomoSK_comp12306_c0_seq1
104bp
 PKD_domain-containing_protein_[Methanobacterium_lacus]
743 O_BomoSK1066_internal:A_BomoSK_comp3853_c0_seq1
272bp
 PREDICTED:_frizzled-2-like_[Bombyx_mori]
GO:0004871 F obsolete signal transducer activity
GO:0004888 F transmembrane signaling receptor activity
GO:0004930 F G protein-coupled receptor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006898 P receptor-mediated endocytosis
GO:0007165 P signal transduction
GO:0007166 P cell surface receptor signaling pathway
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007411 P axon guidance
GO:0007435 P salivary gland morphogenesis
GO:0008045 P motor neuron axon guidance
GO:0008407 P chaeta morphogenesis
GO:0008585 P female gonad development
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0010906 P regulation of glucose metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0016201 P synaptic target inhibition
GO:0016477 P cell migration
GO:0017147 F Wnt-protein binding
GO:0030139 C endocytic vesicle
GO:0030165 F PDZ domain binding
GO:0031290 P retinal ganglion cell axon guidance
GO:0035206 P regulation of hemocyte proliferation
GO:0035567 P non-canonical Wnt signaling pathway
GO:0042813 F Wnt-activated receptor activity
GO:0048675 P axon extension
GO:0050808 P synapse organization
GO:0060070 P canonical Wnt signaling pathway
744 O_BomoSK10670_complete:A_BomoSK_comp12306_c0_seq2
540bp
 PREDICTED:_organic_cation_transporter_protein-like_[Papilio_xuthus]
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
745 O_BomoSK10671_complete:A_BomoSK_comp12306_c0_seq2
104bp
 PKD_domain-containing_protein_[Methanobacterium_lacus]
746 O_BomoSK10672_3prime_partial:A_BomoSK_comp12308_c0_seq1
846bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_rho_GTPase-activating_protein_44_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005923 C bicellular tight junction
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0030054 C cell junction
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
747 O_BomoSK10673_5prime_partial:A_BomoSK_comp12308_c0_seq1
184bp
 signal_transduction_histidine_kinase_[Cyanothece_sp._PCC_7425]
748 O_BomoSK10674_complete:A_BomoSK_comp12308_c0_seq1
180bp
749 O_BomoSK10675_5prime_partial:A_BomoSK_comp12308_c0_seq1
117bp
750 O_BomoSK10676_complete:A_BomoSK_comp12310_c0_seq1
163bp
 PREDICTED:_lysM_domain_receptor-like_kinase_3_isoform_X1_[Nelumbo_nucifera]
previous next from show/33939

- SilkBase 1999-2023 -