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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6601 O_BomoSK15942_complete:A_BomoSK_comp13792_c0_seq2
275bp
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
6602 O_BomoSK15943_5prime_partial:A_BomoSK_comp13792_c0_seq3
248bp
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
6603 O_BomoSK15944_5prime_partial:A_BomoSK_comp13792_c0_seq4
243bp
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
6604 O_BomoSK15945_complete:A_BomoSK_comp13792_c0_seq4
207bp
6605 O_BomoSK15946_complete:A_BomoSK_comp13792_c0_seq5
279bp
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
6606 O_BomoSK15947_complete:A_BomoSK_comp13792_c0_seq6
270bp
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
6607 O_BomoSK15948_complete:A_BomoSK_comp13792_c0_seq6
207bp
6608 O_BomoSK15949_complete:A_BomoSK_comp13792_c0_seq7
274bp
GO:0000166 F nucleotide binding
GO:0000302 P response to reactive oxygen species
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0048026 P positive regulation of mRNA splicing, via spliceosome
GO:0048471 C perinuclear region of cytoplasm
6609 O_BomoSK1594_5prime_partial:A_BomoSK_comp4395_c0_seq1
111bp
 PREDICTED:_telomerase-binding_protein_EST1A_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000333 C telomerase catalytic core complex
GO:0000723 P telomere maintenance
GO:0000781 C chromosome, telomeric region
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0016787 F hydrolase activity
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0043021 F ribonucleoprotein complex binding
GO:0046872 F metal ion binding
GO:0070034 F telomerase RNA binding
GO:0070182 F DNA polymerase binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:1904354 P negative regulation of telomere capping
6610 O_BomoSK15950_complete:A_BomoSK_comp13792_c0_seq7
207bp
6611 O_BomoSK15951_complete:A_BomoSK_comp13794_c0_seq1
106bp
6612 O_BomoSK15952_complete:A_BomoSK_comp13795_c0_seq1
1144bp
6613 O_BomoSK15953_complete:A_BomoSK_comp13795_c0_seq1
272bp
6614 O_BomoSK15954_complete:A_BomoSK_comp13795_c0_seq1
110bp
6615 O_BomoSK15955_complete:A_BomoSK_comp13795_c0_seq2
490bp
6616 O_BomoSK15956_complete:A_BomoSK_comp13795_c0_seq2
272bp
6617 O_BomoSK15957_complete:A_BomoSK_comp13795_c0_seq2
110bp
6618 O_BomoSK15958_complete:A_BomoSK_comp13795_c0_seq3
1144bp
6619 O_BomoSK15959_complete:A_BomoSK_comp13795_c0_seq3
272bp
6620 O_BomoSK1595_internal:A_BomoSK_comp4398_c0_seq1
142bp
 PREDICTED:_glycogen_debranching_enzyme_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004134 F 4-alpha-glucanotransferase activity
GO:0004135 F amylo-alpha-1,6-glucosidase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0005978 P glycogen biosynthetic process
GO:0005980 P glycogen catabolic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
6621 O_BomoSK15960_complete:A_BomoSK_comp13795_c0_seq3
110bp
6622 O_BomoSK15961_complete:A_BomoSK_comp13795_c0_seq4
601bp
6623 O_BomoSK15962_complete:A_BomoSK_comp13795_c0_seq4
272bp
6624 O_BomoSK15963_complete:A_BomoSK_comp13795_c0_seq4
110bp
6625 O_BomoSK15964_complete:A_BomoSK_comp13795_c0_seq4
108bp
6626 O_BomoSK15965_complete:A_BomoSK_comp13795_c0_seq5
1255bp
6627 O_BomoSK15966_complete:A_BomoSK_comp13795_c0_seq5
272bp
6628 O_BomoSK15967_complete:A_BomoSK_comp13795_c0_seq5
110bp
6629 O_BomoSK15968_complete:A_BomoSK_comp13795_c0_seq6
526bp
6630 O_BomoSK15969_complete:A_BomoSK_comp13795_c0_seq6
352bp
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