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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6331 O_BomoSK1569_complete:A_BomoSK_comp4370_c0_seq1
114bp
 hypothetical_protein_X777_04430,_partial_[Cerapachys_biroi]
6332 O_BomoSK156_5prime_partial:A_BomoSK_comp514_c0_seq1
102bp
 (Dimethylallyl)adenosine_tRNA_methylthiotransferase_MiaB_[candidate_division_SR1_bacterium_Aalborg_AAW-1]
6333 O_BomoSK15700_complete:A_BomoSK_comp13727_c0_seq14
351bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
6334 O_BomoSK15701_complete:A_BomoSK_comp13727_c0_seq14
105bp
6335 O_BomoSK15702_complete:A_BomoSK_comp13727_c0_seq14
103bp
6336 O_BomoSK15703_complete:A_BomoSK_comp13727_c0_seq15
515bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0016020 C membrane
6337 O_BomoSK15704_complete:A_BomoSK_comp13727_c0_seq15
105bp
6338 O_BomoSK15705_complete:A_BomoSK_comp13727_c0_seq15
103bp
6339 O_BomoSK15706_complete:A_BomoSK_comp13727_c0_seq16
151bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
6340 O_BomoSK15707_complete:A_BomoSK_comp13727_c0_seq16
105bp
6341 O_BomoSK15708_complete:A_BomoSK_comp13727_c0_seq17
351bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
6342 O_BomoSK15709_complete:A_BomoSK_comp13727_c0_seq17
105bp
6343 O_BomoSK1570_internal:A_BomoSK_comp4374_c0_seq1
498bp
 PREDICTED:_sex_determination_protein_fruitless-like_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003680 F minor groove of adenine-thymine-rich DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005701 C polytene chromosome chromocenter
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007455 P eye-antennal disc morphogenesis
GO:0007478 P leg disc morphogenesis
GO:0019233 P sensory perception of pain
GO:0061040 P female gonad morphogenesis
6344 O_BomoSK15710_complete:A_BomoSK_comp13727_c0_seq17
103bp
6345 O_BomoSK15711_complete:A_BomoSK_comp13727_c0_seq18
351bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
6346 O_BomoSK15712_complete:A_BomoSK_comp13727_c0_seq18
105bp
6347 O_BomoSK15713_complete:A_BomoSK_comp13727_c0_seq18
103bp
6348 O_BomoSK15714_complete:A_BomoSK_comp13727_c0_seq19
151bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
6349 O_BomoSK15715_complete:A_BomoSK_comp13727_c0_seq19
105bp
6350 O_BomoSK15716_complete:A_BomoSK_comp13727_c0_seq20
351bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
6351 O_BomoSK15717_complete:A_BomoSK_comp13727_c0_seq20
103bp
6352 O_BomoSK15718_complete:A_BomoSK_comp13727_c0_seq21
151bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
6353 O_BomoSK15719_complete:A_BomoSK_comp13727_c0_seq21
105bp
6354 O_BomoSK1571_3prime_partial:A_BomoSK_comp4376_c0_seq1
501bp
 PREDICTED:_suppressor_of_SWI4_1_homolog_[Papilio_xuthus]
GO:0000027 P ribosomal large subunit assembly
GO:0001560 P regulation of cell growth by extracellular stimulus
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0019843 F rRNA binding
GO:0030687 C preribosome, large subunit precursor
GO:0044822 F RNA binding
6355 O_BomoSK15720_complete:A_BomoSK_comp13727_c0_seq22
351bp
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
6356 O_BomoSK15721_complete:A_BomoSK_comp13727_c0_seq22
105bp
6357 O_BomoSK15722_complete:A_BomoSK_comp13727_c0_seq22
103bp
6358 O_BomoSK15723_complete:A_BomoSK_comp13728_c0_seq1
741bp
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005543 F phospholipid binding
GO:0005548 F phospholipid transporter activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008203 P cholesterol metabolic process
GO:0009720 P detection of hormone stimulus
GO:0009897 C external side of plasma membrane
GO:0010033 P response to organic substance
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010872 P regulation of cholesterol esterification
GO:0010875 P positive regulation of cholesterol efflux
GO:0010887 P negative regulation of cholesterol storage
GO:0010888 P negative regulation of lipid storage
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019534 F toxin transmembrane transporter activity
GO:0030301 P cholesterol transport
GO:0032367 P intracellular cholesterol transport
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0033993 P response to lipid
GO:0034041 F ABC-type sterol transporter activity
GO:0034374 P low-density lipoprotein particle remodeling
GO:0034375 P high-density lipoprotein particle remodeling
GO:0034436 P glycoprotein transport
GO:0034437 F obsolete glycoprotein transmembrane transporter activity
GO:0042157 P lipoprotein metabolic process
GO:0042632 P cholesterol homeostasis
GO:0042803 F protein homodimerization activity
GO:0042987 P amyloid precursor protein catabolic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0043531 F ADP binding
GO:0043691 P reverse cholesterol transport
GO:0045542 P positive regulation of cholesterol biosynthetic process
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0055037 C recycling endosome
GO:0055085 P transmembrane transport
GO:0055091 P phospholipid homeostasis
GO:0055099 P cellular response to high density lipoprotein particle stimulus
GO:1901998 P toxin transport
6359 O_BomoSK15724_complete:A_BomoSK_comp13728_c0_seq1
175bp
6360 O_BomoSK15725_complete:A_BomoSK_comp13729_c0_seq2
107bp
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