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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
631 O_BomoSK10569_complete:A_BomoSK_comp12248_c0_seq1
728bp
 PREDICTED:_CTL-like_protein_2_isoform_X2_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
632 O_BomoSK1056_3prime_partial:A_BomoSK_comp3843_c0_seq1
1091bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_symplekin_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005848 C mRNA cleavage stimulating factor complex
GO:0006378 P mRNA polyadenylation
GO:0006379 P mRNA cleavage
GO:0006397 P mRNA processing
GO:0006398 P mRNA 3'-end processing by stem-loop binding and cleavage
GO:0035363 C histone locus body
633 O_BomoSK10570_complete:A_BomoSK_comp12248_c0_seq1
128bp
 histidine_kinase_[Actinoplanes_missouriensis]
634 O_BomoSK10571_5prime_partial:A_BomoSK_comp12248_c0_seq2
501bp
 PREDICTED:_CTL-like_protein_2_isoform_X3_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
635 O_BomoSK10572_complete:A_BomoSK_comp12248_c0_seq3
728bp
 PREDICTED:_CTL-like_protein_2_isoform_X2_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
636 O_BomoSK10573_complete:A_BomoSK_comp12248_c0_seq3
128bp
 histidine_kinase_[Actinoplanes_missouriensis]
637 O_BomoSK10574_complete:A_BomoSK_comp12249_c0_seq1
626bp
 ATP-dependent_RNA_helicase_DDX54_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005102 F signaling receptor binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016070 P RNA metabolic process
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030331 F estrogen receptor binding
GO:0044822 F RNA binding
GO:1903507 P negative regulation of nucleic acid-templated transcription
638 O_BomoSK10575_5prime_partial:A_BomoSK_comp12249_c0_seq1
207bp
 peptidase_family_M28_[Neurospora_crassa_OR74A]
639 O_BomoSK10576_complete:A_BomoSK_comp12249_c0_seq1
143bp
640 O_BomoSK10577_complete:A_BomoSK_comp12249_c0_seq1
136bp
 ATP-dependent_RNA_helicase_DDX54-like_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005102 F signaling receptor binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016070 P RNA metabolic process
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030331 F estrogen receptor binding
GO:0030520 P intracellular estrogen receptor signaling pathway
GO:0044822 F RNA binding
GO:1903507 P negative regulation of nucleic acid-templated transcription
641 O_BomoSK10578_complete:A_BomoSK_comp12249_c0_seq2
749bp
 ATP-dependent_RNA_helicase_DDX54_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005102 F signaling receptor binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016070 P RNA metabolic process
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0030331 F estrogen receptor binding
GO:0044822 F RNA binding
GO:1903507 P negative regulation of nucleic acid-templated transcription
642 O_BomoSK10579_5prime_partial:A_BomoSK_comp12249_c0_seq2
207bp
 peptidase_family_M28_[Neurospora_crassa_OR74A]
643 O_BomoSK1057_complete:A_BomoSK_comp3843_c0_seq1
220bp
644 O_BomoSK10580_complete:A_BomoSK_comp12249_c0_seq2
143bp
645 O_BomoSK10581_complete:A_BomoSK_comp12249_c0_seq2
131bp
 Os11g0599466_[Oryza_sativa_Japonica_Group]
646 O_BomoSK10582_complete:A_BomoSK_comp12250_c0_seq1
289bp
 hypothetical_protein_RR46_04068_[Papilio_xuthus]
647 O_BomoSK10583_complete:A_BomoSK_comp12252_c0_seq1
143bp
 PREDICTED:_uncharacterized_protein_C14orf119_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
648 O_BomoSK10584_complete:A_BomoSK_comp12252_c0_seq2
167bp
 PREDICTED:_uncharacterized_protein_C14orf119_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
649 O_BomoSK10585_complete:A_BomoSK_comp12252_c0_seq3
143bp
 PREDICTED:_uncharacterized_protein_C14orf119_isoform_X1_[Bombyx_mori]
GO:0005739 C mitochondrion
650 O_BomoSK10586_complete:A_BomoSK_comp12253_c0_seq1
139bp
 PREDICTED:_uncharacterized_protein_C1683.06c-like_[Bombyx_mori]
651 O_BomoSK10587_5prime_partial:A_BomoSK_comp12253_c0_seq2
339bp
 PREDICTED:_uncharacterized_protein_C1683.06c-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006152 P purine nucleoside catabolic process
GO:0008152 P metabolic process
GO:0008477 F purine nucleosidase activity
GO:0008655 P pyrimidine-containing compound salvage
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0019358 P nicotinate nucleotide salvage
GO:0034356 P NAD biosynthesis via nicotinamide riboside salvage pathway
GO:0045437 F uridine nucleosidase activity
GO:0046135 P pyrimidine nucleoside catabolic process
GO:0050263 F ribosylpyrimidine nucleosidase activity
GO:0070635 F nicotinamide riboside hydrolase activity
GO:0070636 F nicotinic acid riboside hydrolase activity
652 O_BomoSK10588_5prime_partial:A_BomoSK_comp12253_c0_seq3
323bp
 PREDICTED:_uncharacterized_protein_C1683.06c-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006152 P purine nucleoside catabolic process
GO:0008152 P metabolic process
GO:0008477 F purine nucleosidase activity
GO:0008655 P pyrimidine-containing compound salvage
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0019358 P nicotinate nucleotide salvage
GO:0034356 P NAD biosynthesis via nicotinamide riboside salvage pathway
GO:0045437 F uridine nucleosidase activity
GO:0046135 P pyrimidine nucleoside catabolic process
GO:0050263 F ribosylpyrimidine nucleosidase activity
GO:0070635 F nicotinamide riboside hydrolase activity
GO:0070636 F nicotinic acid riboside hydrolase activity
653 O_BomoSK10589_complete:A_BomoSK_comp12257_c0_seq1
119bp
 PREDICTED:_ADP-ribosylation_factor-like_protein_2,_partial_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0005829 C cytosol
GO:0006471 P protein ADP-ribosylation
GO:0007264 P small GTPase mediated signal transduction
GO:0007269 P neurotransmitter secretion
GO:0015031 P protein transport
GO:0016197 P endosomal transport
GO:0022008 P neurogenesis
GO:0048488 P synaptic vesicle endocytosis
GO:0098793 C presynapse
654 O_BomoSK1058_complete:A_BomoSK_comp3843_c0_seq1
180bp
655 O_BomoSK10590_complete:A_BomoSK_comp12257_c0_seq2
185bp
 PREDICTED:_ADP-ribosylation_factor-like_protein_2_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0007049 P cell cycle
GO:0007264 P small GTPase mediated signal transduction
GO:0010811 P positive regulation of cell-substrate adhesion
GO:0015031 P protein transport
GO:0016328 C lateral plasma membrane
GO:0019003 F GDP binding
GO:0031113 P regulation of microtubule polymerization
GO:0031116 P positive regulation of microtubule polymerization
GO:0034260 P negative regulation of GTPase activity
GO:0051297 P centrosome cycle
GO:0051457 P maintenance of protein location in nucleus
GO:0070062 C extracellular exosome
GO:0070830 P bicellular tight junction assembly
656 O_BomoSK10591_complete:A_BomoSK_comp12259_c0_seq1
215bp
 PREDICTED:_protein_unc-119_homolog_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0007399 P nervous system development
GO:0008289 F lipid binding
GO:0015031 P protein transport
657 O_BomoSK10592_3prime_partial:A_BomoSK_comp12260_c0_seq1
223bp
 PREDICTED:_protein_RMD5_homolog_B_[Bombyx_mori]
658 O_BomoSK10593_5prime_partial:A_BomoSK_comp12260_c0_seq1
124bp
659 O_BomoSK10594_complete:A_BomoSK_comp12261_c0_seq1
349bp
 PREDICTED:_torsin-like_protein_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005635 C nuclear envelope
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006457 P protein folding
GO:0016887 F ATP hydrolysis activity
GO:0040011 P locomotion
GO:0042053 P regulation of dopamine metabolic process
GO:0043104 P positive regulation of GTP cyclohydrolase I activity
GO:0048085 P adult chitin-containing cuticle pigmentation
GO:0051085 P chaperone cofactor-dependent protein refolding
GO:0071426 P obsolete ribonucleoprotein complex export from nucleus
660 O_BomoSK10595_complete:A_BomoSK_comp12262_c0_seq1
334bp
 PREDICTED:_bifunctional_methylenetetrahydrofolate_dehydrogenase/cyclohydrolase,_mitochondrial_isoform_X1_[Plutella_xylostella]
GO:0000105 P histidine biosynthetic process
GO:0003824 F catalytic activity
GO:0004329 F formate-tetrahydrofolate ligase activity
GO:0004477 F methenyltetrahydrofolate cyclohydrolase activity
GO:0004487 F methylenetetrahydrofolate dehydrogenase (NAD+) activity
GO:0004488 F methylenetetrahydrofolate dehydrogenase (NADP+) activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006164 P purine nucleotide biosynthetic process
GO:0006730 P one-carbon metabolic process
GO:0008152 P metabolic process
GO:0008652 P cellular amino acid biosynthetic process
GO:0009086 P methionine biosynthetic process
GO:0009256 P 10-formyltetrahydrofolate metabolic process
GO:0009396 P folic acid-containing compound biosynthetic process
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016787 F hydrolase activity
GO:0035999 P tetrahydrofolate interconversion
GO:0046655 P folic acid metabolic process
GO:0055114 P obsolete oxidation-reduction process
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