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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
6001 O_BomoSK15401_complete:A_BomoSK_comp13692_c0_seq7
112bp
 hypothetical_protein_CSIM01_13232_[Colletotrichum_simmondsii]
6002 O_BomoSK15402_complete:A_BomoSK_comp13692_c0_seq8
515bp
 Hrp59_protein_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
6003 O_BomoSK15403_complete:A_BomoSK_comp13692_c0_seq8
112bp
 hypothetical_protein_CSIM01_13232_[Colletotrichum_simmondsii]
6004 O_BomoSK15404_complete:A_BomoSK_comp13692_c0_seq9
515bp
 Hrp59_protein_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
6005 O_BomoSK15405_complete:A_BomoSK_comp13692_c0_seq9
112bp
 hypothetical_protein_CSIM01_13232_[Colletotrichum_simmondsii]
6006 O_BomoSK15406_complete:A_BomoSK_comp13692_c0_seq10
506bp
 Hrp59_protein_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
6007 O_BomoSK15407_complete:A_BomoSK_comp13692_c0_seq10
112bp
 hypothetical_protein_CSIM01_13232_[Colletotrichum_simmondsii]
6008 O_BomoSK15408_complete:A_BomoSK_comp13692_c0_seq11
506bp
 Hrp59_protein_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
6009 O_BomoSK15409_complete:A_BomoSK_comp13692_c0_seq11
112bp
 hypothetical_protein_CSIM01_13232_[Colletotrichum_simmondsii]
6010 O_BomoSK1540_3prime_partial:A_BomoSK_comp4347_c0_seq1
217bp
 cyclin-dependent_kinase_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002088 P lens development in camera-type eye
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0009636 P response to toxic substance
GO:0015030 C Cajal body
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030332 F cyclin binding
GO:0031100 P animal organ regeneration
GO:0032355 P response to estradiol
GO:0032403 F protein-containing complex binding
GO:0032869 P cellular response to insulin stimulus
GO:0042493 P response to xenobiotic stimulus
GO:0043231 C intracellular membrane-bounded organelle
GO:0045471 P response to ethanol
GO:0046686 P response to cadmium ion
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0051591 P response to cAMP
GO:0051602 P response to electrical stimulus
GO:0051726 P regulation of cell cycle
6011 O_BomoSK15410_complete:A_BomoSK_comp13692_c0_seq12
506bp
 Hrp59_protein_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
6012 O_BomoSK15411_complete:A_BomoSK_comp13692_c0_seq12
112bp
 hypothetical_protein_CSIM01_13232_[Colletotrichum_simmondsii]
6013 O_BomoSK15412_5prime_partial:A_BomoSK_comp13693_c0_seq1
1254bp
 PREDICTED:_dystrophin,_isoform_B-like_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007274 P neuromuscular synaptic transmission
GO:0007474 P imaginal disc-derived wing vein specification
GO:0008092 F cytoskeletal protein binding
GO:0008270 F zinc ion binding
GO:0008307 F structural constituent of muscle
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0016010 C dystrophin-associated glycoprotein complex
GO:0016020 C membrane
GO:0030010 P establishment of cell polarity
GO:0042383 C sarcolemma
GO:0045202 C synapse
GO:0046716 P muscle cell cellular homeostasis
GO:0046872 F metal ion binding
GO:0046928 P regulation of neurotransmitter secretion
GO:0048172 P regulation of short-term neuronal synaptic plasticity
GO:0050699 F WW domain binding
6014 O_BomoSK15413_5prime_partial:A_BomoSK_comp13693_c0_seq1
164bp
6015 O_BomoSK15414_complete:A_BomoSK_comp13693_c0_seq1
163bp
6016 O_BomoSK15415_3prime_partial:A_BomoSK_comp13693_c0_seq1
146bp
 PREDICTED:_deleted_in_malignant_brain_tumors_1_protein_isoform_X12_[Canis_lupus_familiaris]
6017 O_BomoSK15416_complete:A_BomoSK_comp13693_c0_seq1
127bp
6018 O_BomoSK15417_complete:A_BomoSK_comp13693_c0_seq1
107bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_ABC_transporter_G_family_member_32-like_[Erythranthe_guttata]
6019 O_BomoSK15418_5prime_partial:A_BomoSK_comp13696_c0_seq1
613bp
 PREDICTED:_DNA_excision_repair_protein_ERCC-6-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000303 P response to superoxide
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006284 P base-excision repair
GO:0006290 P pyrimidine dimer repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006362 P transcription elongation from RNA polymerase I promoter
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0006979 P response to oxidative stress
GO:0007256 P obsolete activation of JNKK activity
GO:0007257 P obsolete activation of JUN kinase activity
GO:0008022 F protein C-terminus binding
GO:0008023 C transcription elongation factor complex
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 P response to UV
GO:0009636 P response to toxic substance
GO:0010165 P response to X-ray
GO:0010224 P response to UV-B
GO:0010332 P response to gamma radiation
GO:0016787 F hydrolase activity
GO:0030296 F protein tyrosine kinase activator activity
GO:0032403 F protein-containing complex binding
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0035264 P multicellular organism growth
GO:0045494 P photoreceptor cell maintenance
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0047485 F protein N-terminus binding
GO:0061098 P positive regulation of protein tyrosine kinase activity
6020 O_BomoSK15419_complete:A_BomoSK_comp13697_c0_seq1
994bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_WASH_complex_subunit_strumpellin_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:0071203 C WASH complex
6021 O_BomoSK1541_5prime_partial:A_BomoSK_comp4347_c0_seq2
108bp
 cyclin-dependent_kinase_2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004693 F cyclin-dependent protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0006468 P protein phosphorylation
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
6022 O_BomoSK15420_5prime_partial:A_BomoSK_comp13697_c0_seq1
145bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_WASH_complex_subunit_strumpellin_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:0071203 C WASH complex
6023 O_BomoSK15421_5prime_partial:A_BomoSK_comp13697_c0_seq2
1141bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_WASH_complex_subunit_strumpellin_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:0071203 C WASH complex
6024 O_BomoSK15422_complete:A_BomoSK_comp13697_c0_seq3
433bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_WASH_complex_subunit_strumpellin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0007409 P axonogenesis
GO:0015031 P protein transport
GO:0048666 P neuron development
GO:0060047 P heart contraction
GO:0071203 C WASH complex
6025 O_BomoSK15423_5prime_partial:A_BomoSK_comp13697_c0_seq4
1094bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_WASH_complex_subunit_strumpellin_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:0071203 C WASH complex
6026 O_BomoSK15424_complete:A_BomoSK_comp13697_c0_seq5
386bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_WASH_complex_subunit_strumpellin_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0007409 P axonogenesis
GO:0015031 P protein transport
GO:0048666 P neuron development
GO:0060047 P heart contraction
GO:0071203 C WASH complex
6027 O_BomoSK15425_complete:A_BomoSK_comp13697_c0_seq6
947bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_WASH_complex_subunit_strumpellin_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:0071203 C WASH complex
6028 O_BomoSK15426_5prime_partial:A_BomoSK_comp13697_c0_seq6
145bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_WASH_complex_subunit_strumpellin_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:0071203 C WASH complex
6029 O_BomoSK15427_complete:A_BomoSK_comp13698_c0_seq2
116bp
 hypothetical_protein_KGM_00661_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
6030 O_BomoSK15428_complete:A_BomoSK_comp13698_c0_seq3
259bp
 hypothetical_protein_KGM_00661_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
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