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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5971 O_BomoSK15375_5prime_partial:A_BomoSK_comp13690_c0_seq2
103bp
 esterase_[Streptomyces_scopuliridis]
5972 O_BomoSK15376_5prime_partial:A_BomoSK_comp13690_c0_seq3
1077bp
 PREDICTED:_Niemann-Pick_C1_protein_[Bombyx_mori]
GO:0005319 F lipid transporter activity
GO:0005576 C extracellular region
GO:0005635 C nuclear envelope
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005887 C integral component of plasma membrane
GO:0006486 P protein glycosylation
GO:0006629 P lipid metabolic process
GO:0007041 P lysosomal transport
GO:0007165 P signal transduction
GO:0008158 F hedgehog receptor activity
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008206 P bile acid metabolic process
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030301 P cholesterol transport
GO:0031902 C late endosome membrane
GO:0042632 P cholesterol homeostasis
GO:0048471 C perinuclear region of cytoplasm
5973 O_BomoSK15377_complete:A_BomoSK_comp13690_c0_seq3
369bp
5974 O_BomoSK15378_complete:A_BomoSK_comp13690_c0_seq3
337bp
5975 O_BomoSK15379_complete:A_BomoSK_comp13690_c0_seq3
124bp
 hypothetical_protein_ALC53_04645_[Atta_colombica]
5976 O_BomoSK1537_5prime_partial:A_BomoSK_comp4345_c0_seq1
115bp
 PREDICTED:_HHIP-like_protein_1_[Latimeria_chalumnae]
5977 O_BomoSK15380_5prime_partial:A_BomoSK_comp13690_c0_seq4
1093bp
 PREDICTED:_Niemann-Pick_C1_protein_[Bombyx_mori]
GO:0005319 F lipid transporter activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005635 C nuclear envelope
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006486 P protein glycosylation
GO:0006629 P lipid metabolic process
GO:0006897 P endocytosis
GO:0006914 P autophagy
GO:0007041 P lysosomal transport
GO:0007165 P signal transduction
GO:0007628 P adult walking behavior
GO:0008158 F hedgehog receptor activity
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008206 P bile acid metabolic process
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016242 P negative regulation of macroautophagy
GO:0030301 P cholesterol transport
GO:0031579 P membrane raft organization
GO:0031902 C late endosome membrane
GO:0031982 C vesicle
GO:0033344 P cholesterol efflux
GO:0042493 P response to xenobiotic stimulus
GO:0042632 P cholesterol homeostasis
GO:0045121 C membrane raft
GO:0046686 P response to cadmium ion
GO:0046718 P viral entry into host cell
GO:0048471 C perinuclear region of cytoplasm
GO:0060548 P negative regulation of cell death
GO:0070062 C extracellular exosome
GO:0071383 P cellular response to steroid hormone stimulus
GO:0071404 P cellular response to low-density lipoprotein particle stimulus
GO:0090150 P establishment of protein localization to membrane
GO:2000189 P cholesterol homeostasis
5978 O_BomoSK15381_complete:A_BomoSK_comp13690_c0_seq4
369bp
5979 O_BomoSK15382_complete:A_BomoSK_comp13690_c0_seq4
124bp
 hypothetical_protein_ALC53_04645_[Atta_colombica]
5980 O_BomoSK15383_complete:A_BomoSK_comp13691_c0_seq1
768bp
 PREDICTED:_protein_zer-1_homolog_[Amyelois_transitella]
GO:0004842 F ubiquitin-protein transferase activity
GO:0016567 P protein ubiquitination
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0051438 P regulation of ubiquitin-protein transferase activity
5981 O_BomoSK15384_complete:A_BomoSK_comp13691_c0_seq1
129bp
 site-specific_recombinase_XerD_[Frankia_sp._Thr]
5982 O_BomoSK15385_complete:A_BomoSK_comp13691_c0_seq1
126bp
 transposase_of_ISAar6,_IS256_family_protein,_partial_[Mycobacterium_phlei_RIVM601174]
5983 O_BomoSK15386_complete:A_BomoSK_comp13691_c0_seq2
629bp
 PREDICTED:_protein_zer-1_homolog_[Amyelois_transitella]
GO:0004842 F ubiquitin-protein transferase activity
GO:0016567 P protein ubiquitination
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0051438 P regulation of ubiquitin-protein transferase activity
5984 O_BomoSK15387_complete:A_BomoSK_comp13691_c0_seq2
126bp
 transposase_of_ISAar6,_IS256_family_protein,_partial_[Mycobacterium_phlei_RIVM601174]
5985 O_BomoSK15388_complete:A_BomoSK_comp13692_c0_seq1
506bp
 Hrp59_protein_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
5986 O_BomoSK15389_complete:A_BomoSK_comp13692_c0_seq1
112bp
 hypothetical_protein_CSIM01_13232_[Colletotrichum_simmondsii]
5987 O_BomoSK1538_internal:A_BomoSK_comp4346_c0_seq2
362bp
 PREDICTED:_histone_acetyltransferase_KAT7_[Bombyx_mori]
GO:0000123 C histone acetyltransferase complex
GO:0003700 F DNA-binding transcription factor activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006260 P DNA replication
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0016747 F acyltransferase activity, transferring groups other than amino-acyl groups
GO:0043966 P histone H3 acetylation
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043983 P histone H4-K12 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0046872 F metal ion binding
GO:1900182 P positive regulation of protein localization to nucleus
5988 O_BomoSK15390_complete:A_BomoSK_comp13692_c0_seq2
515bp
 Hrp59_protein_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
5989 O_BomoSK15391_complete:A_BomoSK_comp13692_c0_seq2
112bp
 hypothetical_protein_CSIM01_13232_[Colletotrichum_simmondsii]
5990 O_BomoSK15392_complete:A_BomoSK_comp13692_c0_seq3
506bp
 Hrp59_protein_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
5991 O_BomoSK15393_complete:A_BomoSK_comp13692_c0_seq3
112bp
 hypothetical_protein_CSIM01_13232_[Colletotrichum_simmondsii]
5992 O_BomoSK15394_5prime_partial:A_BomoSK_comp13692_c0_seq4
516bp
 Hrp59_protein_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
5993 O_BomoSK15395_complete:A_BomoSK_comp13692_c0_seq4
112bp
 hypothetical_protein_CSIM01_13232_[Colletotrichum_simmondsii]
5994 O_BomoSK15396_complete:A_BomoSK_comp13692_c0_seq5
515bp
 Hrp59_protein_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
5995 O_BomoSK15397_complete:A_BomoSK_comp13692_c0_seq5
112bp
 hypothetical_protein_CSIM01_13232_[Colletotrichum_simmondsii]
5996 O_BomoSK15398_complete:A_BomoSK_comp13692_c0_seq6
515bp
 Hrp59_protein_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
5997 O_BomoSK15399_complete:A_BomoSK_comp13692_c0_seq6
112bp
 hypothetical_protein_CSIM01_13232_[Colletotrichum_simmondsii]
5998 O_BomoSK1539_3prime_partial:A_BomoSK_comp4346_c0_seq2
117bp
 hypothetical_protein_[Mycobacterium_mageritense]
5999 O_BomoSK153_internal:A_BomoSK_comp511_c1_seq1
167bp
 PREDICTED:_fructose-bisphosphate_aldolase_isoform_X1_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0004332 F fructose-bisphosphate aldolase activity
GO:0005829 C cytosol
GO:0006096 P glycolytic process
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007498 P mesoderm development
GO:0016829 F lyase activity
GO:0030018 C Z disc
GO:0031430 C M band
6000 O_BomoSK15400_complete:A_BomoSK_comp13692_c0_seq7
506bp
 Hrp59_protein_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000380 P alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0019904 F protein domain specific binding
GO:0030529 C ribonucleoprotein complex
GO:0031012 C extracellular matrix
GO:0042382 C paraspeckles
GO:0044822 F RNA binding
GO:0048306 F calcium-dependent protein binding
GO:0070062 C extracellular exosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:1900182 P positive regulation of protein localization to nucleus
GO:1904591 P positive regulation of protein import
GO:1990405 F protein antigen binding
GO:1990831 P cellular response to carcinoembryonic antigen
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