Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
5611	O_BomoSK15050_complete:A_BomoSK_comp13633_c0_seq7 1125bp	Bomo_Chr4	PREDICTED:_DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003697 F single-stranded DNA binding GO:0003824 F catalytic activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0006281 P DNA repair GO:0006289 P nucleotide-excision repair GO:0006974 P cellular response to DNA damage stimulus GO:0009408 P response to heat GO:0010213 P non-photoreactive DNA repair GO:0016787 F hydrolase activity GO:0016788 F hydrolase activity, acting on ester bonds GO:0046872 F metal ion binding GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5612	O_BomoSK15051_complete:A_BomoSK_comp13633_c0_seq7 154bp	Bomo_Chr4	ABC_transporter_ATP-binding_protein_[Prevotella_sp._oral_taxon_317]
5613	O_BomoSK15052_complete:A_BomoSK_comp13633_c0_seq7 102bp	Bomo_Chr4	hypothetical_protein_[Methanosarcina_mazei]
5614	O_BomoSK15053_complete:A_BomoSK_comp13633_c0_seq8 746bp	Bomo_Chr4	PREDICTED:_DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003697 F single-stranded DNA binding GO:0003824 F catalytic activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0006281 P DNA repair GO:0006289 P nucleotide-excision repair GO:0006974 P cellular response to DNA damage stimulus GO:0009408 P response to heat GO:0010213 P non-photoreactive DNA repair GO:0016787 F hydrolase activity GO:0016788 F hydrolase activity, acting on ester bonds GO:0046872 F metal ion binding GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5615	O_BomoSK15054_complete:A_BomoSK_comp13633_c0_seq8 165bp	Bomo_Chr4	PREDICTED:_DNA_repair_protein_complementing_XP-G_cells_[Papilio_polytes]	GO:0000405 F bubble DNA binding GO:0003677 F DNA binding GO:0003690 F double-stranded DNA binding GO:0003697 F single-stranded DNA binding GO:0003824 F catalytic activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0004520 F endodeoxyribonuclease activity GO:0005634 C nucleus GO:0005662 C DNA replication factor A complex GO:0005675 C transcription factor TFIIH holo complex GO:0006281 P DNA repair GO:0006283 P transcription-coupled nucleotide-excision repair GO:0006289 P nucleotide-excision repair GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion GO:0006974 P cellular response to DNA damage stimulus GO:0008340 P determination of adult lifespan GO:0009411 P response to UV GO:0009650 P UV protection GO:0010225 P response to UV-C GO:0016591 C RNA polymerase II, holoenzyme GO:0016787 F hydrolase activity GO:0016788 F hydrolase activity, acting on ester bonds GO:0035264 P multicellular organism growth GO:0042803 F protein homodimerization activity GO:0043066 P negative regulation of apoptotic process GO:0046872 F metal ion binding GO:0047485 F protein N-terminus binding
5616	O_BomoSK15055_complete:A_BomoSK_comp13633_c0_seq8 136bp	Bomo_Chr4	ABC_transporter_ATP-binding_protein_[Prevotella_sp._oral_taxon_317]
5617	O_BomoSK15056_5prime_partial:A_BomoSK_comp13634_c0_seq1 979bp	Bomo_Scaf003	Retrotransposable_element_Tf2_155_kDa_protein_type_1_[Papilio_machaon]	GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003723 F RNA binding GO:0003824 F catalytic activity GO:0003887 F DNA-directed DNA polymerase activity GO:0003964 F RNA-directed DNA polymerase activity GO:0004190 F aspartic-type endopeptidase activity GO:0004518 F nuclease activity GO:0004519 F endonuclease activity GO:0005737 C cytoplasm GO:0006278 P RNA-dependent DNA biosynthetic process GO:0006310 P DNA recombination GO:0006508 P proteolysis GO:0008152 P metabolic process GO:0008233 F peptidase activity GO:0015074 P DNA integration GO:0016740 F transferase activity GO:0016779 F nucleotidyltransferase activity GO:0016787 F hydrolase activity GO:0046872 F metal ion binding GO:0071897 P DNA biosynthetic process GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5618	O_BomoSK15057_complete:A_BomoSK_comp13634_c0_seq1 103bp	Bomo_Scaf003	unnamed_protein_product_[Trypanosoma_congolense_IL3000]
5619	O_BomoSK15058_5prime_partial:A_BomoSK_comp13635_c0_seq1 593bp	Bomo_Chr21	PREDICTED:_DET1_homolog_[Amyelois_transitella]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005634 C nucleus GO:0008150 P biological_process
5620	O_BomoSK15059_5prime_partial:A_BomoSK_comp13635_c0_seq2 593bp	Bomo_Chr21	PREDICTED:_DET1_homolog_[Amyelois_transitella]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005634 C nucleus GO:0008150 P biological_process
5621	O_BomoSK1505_5prime_partial:A_BomoSK_comp4319_c0_seq1 718bp	Bomo_Chr12	Synaptojanin_[Operophtera_brumata]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0004438 F phosphatidylinositol-3-phosphatase activity GO:0004439 F phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity GO:0004445 F inositol-polyphosphate 5-phosphatase activity GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0005874 C microtubule GO:0006661 P phosphatidylinositol biosynthetic process GO:0006796 P phosphate-containing compound metabolic process GO:0006836 P neurotransmitter transport GO:0006897 P endocytosis GO:0007612 P learning GO:0016082 P synaptic vesicle priming GO:0016191 P synaptic vesicle uncoating GO:0016787 F hydrolase activity GO:0030117 C membrane coat GO:0030132 C clathrin coat of coated pit GO:0034595 F phosphatidylinositol phosphate 5-phosphatase activity GO:0034596 F phosphatidylinositol phosphate 4-phosphatase activity GO:0036092 P phosphatidylinositol-3-phosphate biosynthetic process GO:0042578 F phosphoric ester hydrolase activity GO:0043647 P inositol phosphate metabolic process GO:0043812 F phosphatidylinositol-4-phosphate phosphatase activity GO:0043813 F phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity GO:0046488 P phosphatidylinositol metabolic process GO:0046855 P inositol phosphate dephosphorylation GO:0046856 P phosphatidylinositol dephosphorylation GO:0048488 P synaptic vesicle endocytosis GO:0048489 P synaptic vesicle transport GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity GO:0052658 F inositol-1,4,5-trisphosphate 5-phosphatase activity GO:0052659 F inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity GO:0097060 C synaptic membrane GO:0098793 C presynapse GO:1901632 P regulation of synaptic vesicle membrane organization GO:1903390 P positive regulation of synaptic vesicle uncoating GO:1904980 P positive regulation of endosome organization
5622	O_BomoSK15060_5prime_partial:A_BomoSK_comp13635_c0_seq2 305bp	Bomo_Chr21	PREDICTED:_tyrosine-protein_kinase_CSK_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0001817 P regulation of cytokine production GO:0002250 P adaptive immune response GO:0002376 P immune system process GO:0004672 F protein kinase activity GO:0004713 F protein tyrosine kinase activity GO:0004715 F non-membrane spanning protein tyrosine kinase activity GO:0005102 F signaling receptor binding GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005737 C cytoplasm GO:0005886 C plasma membrane GO:0005911 C cell-cell junction GO:0006468 P protein phosphorylation GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway GO:0007417 P central nervous system development GO:0007420 P brain development GO:0008285 P negative regulation of cell population proliferation GO:0010989 P negative regulation of low-density lipoprotein particle clearance GO:0016020 C membrane GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016477 P cell migration GO:0016740 F transferase activity GO:0019903 F protein phosphatase binding GO:0030154 P cell differentiation GO:0031234 C extrinsic component of cytoplasmic side of plasma membrane GO:0032715 P negative regulation of interleukin-6 production GO:0033673 P negative regulation of kinase activity GO:0034236 F protein kinase A catalytic subunit binding GO:0034332 P adherens junction organization GO:0035556 P intracellular signal transduction GO:0038083 P peptidyl-tyrosine autophosphorylation GO:0042802 F identical protein binding GO:0042997 P negative regulation of Golgi to plasma membrane protein transport GO:0043406 P positive regulation of MAP kinase activity GO:0045087 P innate immune response GO:0045121 C membrane raft GO:0045779 P negative regulation of bone resorption GO:0046777 P protein autophosphorylation GO:0046872 F metal ion binding GO:0048709 P oligodendrocyte differentiation GO:0050765 P negative regulation of phagocytosis GO:0050863 P regulation of T cell activation GO:0060368 P regulation of Fc receptor mediated stimulatory signaling pathway GO:0070062 C extracellular exosome GO:0070064 F proline-rich region binding GO:0070373 P negative regulation of ERK1 and ERK2 cascade GO:0071375 P cellular response to peptide hormone stimulus
5623	O_BomoSK15061_complete:A_BomoSK_comp13635_c0_seq2 180bp	Bomo_Chr21	citrate_transporter_[Escherichia_hermannii]
5624	O_BomoSK15062_complete:A_BomoSK_comp13635_c0_seq2 145bp	Bomo_Chr21
5625	O_BomoSK15063_complete:A_BomoSK_comp13636_c0_seq1 1022bp	Bomo_Chr22	PREDICTED:_2-oxoglutarate_dehydrogenase,_mitochondrial_isoform_X2_[Papilio_xuthus]	GO:0004591 F oxoglutarate dehydrogenase (succinyl-transferring) activity GO:0005739 C mitochondrion GO:0005759 C mitochondrial matrix GO:0006091 P generation of precursor metabolites and energy GO:0006096 P glycolytic process GO:0006099 P tricarboxylic acid cycle GO:0008152 P metabolic process GO:0016491 F oxidoreductase activity GO:0016624 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor GO:0030976 F thiamine pyrophosphate binding GO:0031966 C mitochondrial membrane GO:0046872 F metal ion binding GO:0055114 P obsolete oxidation-reduction process
5626	O_BomoSK15064_complete:A_BomoSK_comp13636_c0_seq1 168bp	Bomo_Chr22	Uncharacterised_protein_[Bordetella_pertussis]
5627	O_BomoSK15065_complete:A_BomoSK_comp13636_c0_seq1 146bp	Bomo_Chr22	hypothetical_protein_BDIM_27930_[Brevundimonas_diminuta_ATCC_11568]
5628	O_BomoSK15066_complete:A_BomoSK_comp13636_c0_seq1 120bp	Bomo_Chr22	hypothetical_protein_WH47_06797,_partial_[Habropoda_laboriosa]
5629	O_BomoSK15067_complete:A_BomoSK_comp13636_c0_seq2 1022bp	Bomo_Chr22	PREDICTED:_2-oxoglutarate_dehydrogenase,_mitochondrial_isoform_X2_[Papilio_xuthus]	GO:0004591 F oxoglutarate dehydrogenase (succinyl-transferring) activity GO:0005739 C mitochondrion GO:0005759 C mitochondrial matrix GO:0006091 P generation of precursor metabolites and energy GO:0006096 P glycolytic process GO:0006099 P tricarboxylic acid cycle GO:0008152 P metabolic process GO:0016491 F oxidoreductase activity GO:0016624 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor GO:0030976 F thiamine pyrophosphate binding GO:0031966 C mitochondrial membrane GO:0046872 F metal ion binding GO:0055114 P obsolete oxidation-reduction process
5630	O_BomoSK15068_complete:A_BomoSK_comp13636_c0_seq2 168bp	Bomo_Chr22	Uncharacterised_protein_[Bordetella_pertussis]
5631	O_BomoSK15069_complete:A_BomoSK_comp13636_c0_seq2 146bp	Bomo_Chr22	hypothetical_protein_BDIM_27930_[Brevundimonas_diminuta_ATCC_11568]
5632	O_BomoSK1506_3prime_partial:A_BomoSK_comp4319_c1_seq1 385bp	Bomo_Chr12	PREDICTED:_synaptojanin-1_[Papilio_machaon]	GO:0000166 F nucleotide binding GO:0003676 F nucleic acid binding GO:0003723 F RNA binding GO:0004438 F phosphatidylinositol-3-phosphatase activity GO:0004439 F phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity GO:0004445 F inositol-polyphosphate 5-phosphatase activity GO:0005737 C cytoplasm GO:0005829 C cytosol GO:0005874 C microtubule GO:0006661 P phosphatidylinositol biosynthetic process GO:0006796 P phosphate-containing compound metabolic process GO:0006836 P neurotransmitter transport GO:0006897 P endocytosis GO:0007612 P learning GO:0016082 P synaptic vesicle priming GO:0016191 P synaptic vesicle uncoating GO:0016787 F hydrolase activity GO:0030117 C membrane coat GO:0030132 C clathrin coat of coated pit GO:0034595 F phosphatidylinositol phosphate 5-phosphatase activity GO:0034596 F phosphatidylinositol phosphate 4-phosphatase activity GO:0036092 P phosphatidylinositol-3-phosphate biosynthetic process GO:0042578 F phosphoric ester hydrolase activity GO:0043647 P inositol phosphate metabolic process GO:0043812 F phosphatidylinositol-4-phosphate phosphatase activity GO:0043813 F phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity GO:0046488 P phosphatidylinositol metabolic process GO:0046855 P inositol phosphate dephosphorylation GO:0046856 P phosphatidylinositol dephosphorylation GO:0048488 P synaptic vesicle endocytosis GO:0048489 P synaptic vesicle transport GO:0052629 F phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity GO:0052658 F inositol-1,4,5-trisphosphate 5-phosphatase activity GO:0052659 F inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity GO:0097060 C synaptic membrane GO:0098793 C presynapse GO:1901632 P regulation of synaptic vesicle membrane organization GO:1903390 P positive regulation of synaptic vesicle uncoating GO:1904980 P positive regulation of endosome organization
5633	O_BomoSK15070_complete:A_BomoSK_comp13636_c0_seq2 120bp	Bomo_Chr22	hypothetical_protein_WH47_06797,_partial_[Habropoda_laboriosa]
5634	O_BomoSK15071_complete:A_BomoSK_comp13636_c0_seq3 102bp	Bomo_Chr22	PREDICTED:_2-oxoglutarate_dehydrogenase,_mitochondrial_[Bombyx_mori]
5635	O_BomoSK15072_complete:A_BomoSK_comp13636_c0_seq4 1058bp	Bomo_Chr22	PREDICTED:_2-oxoglutarate_dehydrogenase,_mitochondrial_[Bombyx_mori]	GO:0004591 F oxoglutarate dehydrogenase (succinyl-transferring) activity GO:0005739 C mitochondrion GO:0005759 C mitochondrial matrix GO:0006091 P generation of precursor metabolites and energy GO:0006096 P glycolytic process GO:0006099 P tricarboxylic acid cycle GO:0008152 P metabolic process GO:0016491 F oxidoreductase activity GO:0016624 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor GO:0030976 F thiamine pyrophosphate binding GO:0031966 C mitochondrial membrane GO:0046872 F metal ion binding GO:0055114 P obsolete oxidation-reduction process
5636	O_BomoSK15073_complete:A_BomoSK_comp13636_c0_seq4 168bp	Bomo_Chr22	Uncharacterised_protein_[Bordetella_pertussis]
5637	O_BomoSK15074_complete:A_BomoSK_comp13636_c0_seq4 146bp	Bomo_Chr22	hypothetical_protein_BDIM_27930_[Brevundimonas_diminuta_ATCC_11568]
5638	O_BomoSK15075_complete:A_BomoSK_comp13636_c0_seq4 120bp	Bomo_Chr22	hypothetical_protein_WH47_06797,_partial_[Habropoda_laboriosa]
5639	O_BomoSK15076_complete:A_BomoSK_comp13636_c0_seq5 1058bp	Bomo_Chr22	PREDICTED:_2-oxoglutarate_dehydrogenase,_mitochondrial_[Bombyx_mori]	GO:0004591 F oxoglutarate dehydrogenase (succinyl-transferring) activity GO:0005739 C mitochondrion GO:0005759 C mitochondrial matrix GO:0006091 P generation of precursor metabolites and energy GO:0006096 P glycolytic process GO:0006099 P tricarboxylic acid cycle GO:0008152 P metabolic process GO:0016491 F oxidoreductase activity GO:0016624 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor GO:0030976 F thiamine pyrophosphate binding GO:0031966 C mitochondrial membrane GO:0046872 F metal ion binding GO:0055114 P obsolete oxidation-reduction process
5640	O_BomoSK15077_complete:A_BomoSK_comp13636_c0_seq5 168bp	Bomo_Chr22	Uncharacterised_protein_[Bordetella_pertussis]