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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5581 O_BomoSK15023_complete:A_BomoSK_comp13627_c0_seq1
1131bp
 PREDICTED:_NADPH_oxidase_5_[Bombyx_mori]
GO:0000302 P response to reactive oxygen species
GO:0000910 P cytokinesis
GO:0001525 P angiogenesis
GO:0001935 P endothelial cell proliferation
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006811 P ion transport
GO:0006915 P apoptotic process
GO:0008283 P cell population proliferation
GO:0010155 P regulation of proton transport
GO:0015252 F proton channel activity
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016175 F superoxide-generating NAD(P)H oxidase activity
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0042554 P superoxide anion generation
GO:0043012 P regulation of fusion of sperm to egg plasma membrane
GO:0046872 F metal ion binding
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0050663 P cytokine production
GO:0055114 P obsolete oxidation-reduction process
GO:2000379 P positive regulation of reactive oxygen species metabolic process
5582 O_BomoSK15024_complete:A_BomoSK_comp13627_c0_seq2
575bp
 PREDICTED:_NADPH_oxidase_5_[Bombyx_mori]
GO:0000302 P response to reactive oxygen species
GO:0000910 P cytokinesis
GO:0001525 P angiogenesis
GO:0001935 P endothelial cell proliferation
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006811 P ion transport
GO:0006915 P apoptotic process
GO:0008283 P cell population proliferation
GO:0010155 P regulation of proton transport
GO:0015252 F proton channel activity
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016175 F superoxide-generating NAD(P)H oxidase activity
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0042554 P superoxide anion generation
GO:0043012 P regulation of fusion of sperm to egg plasma membrane
GO:0046872 F metal ion binding
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0050663 P cytokine production
GO:0055114 P obsolete oxidation-reduction process
GO:2000379 P positive regulation of reactive oxygen species metabolic process
5583 O_BomoSK15025_3prime_partial:A_BomoSK_comp13629_c0_seq1
247bp
 PREDICTED:_uncharacterized_protein_LOC101742598_isoform_X1_[Bombyx_mori]
5584 O_BomoSK15026_complete:A_BomoSK_comp13629_c0_seq2
901bp
 PREDICTED:_uncharacterized_protein_LOC101742598_isoform_X1_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001764 P neuron migration
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0010629 P negative regulation of gene expression
GO:0021610 P facial nerve morphogenesis
GO:0021785 P branchiomotor neuron axon guidance
GO:0022008 P neurogenesis
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0046872 F metal ion binding
GO:0060831 P smoothened signaling pathway involved in dorsal/ventral neural tube patterning
5585 O_BomoSK15027_5prime_partial:A_BomoSK_comp13629_c0_seq3
837bp
 PREDICTED:_uncharacterized_protein_LOC101742598_isoform_X3_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0042803 F protein homodimerization activity
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
5586 O_BomoSK15028_complete:A_BomoSK_comp13631_c0_seq2
559bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_serine/threonine-protein_kinase_PRP4_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005694 C chromosome
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0008380 P RNA splicing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
5587 O_BomoSK15029_complete:A_BomoSK_comp13631_c0_seq3
599bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_serine/threonine-protein_kinase_PRP4_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005694 C chromosome
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0008380 P RNA splicing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
5588 O_BomoSK1502_internal:A_BomoSK_comp4316_c0_seq1
453bp
 PREDICTED:_phosphatidylinositol_4-phosphate_3-kinase_C2_domain-containing_subunit_alpha_isoform_X3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005942 C phosphatidylinositol 3-kinase complex
GO:0006887 P exocytosis
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016303 F 1-phosphatidylinositol-3-kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0031982 C vesicle
GO:0035005 F 1-phosphatidylinositol-4-phosphate 3-kinase activity
GO:0035091 F phosphatidylinositol binding
GO:0036092 P phosphatidylinositol-3-phosphate biosynthetic process
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0048015 P phosphatidylinositol-mediated signaling
GO:0070062 C extracellular exosome
GO:0071583 P negative regulation of zinc ion transmembrane transport
5589 O_BomoSK15030_complete:A_BomoSK_comp13631_c0_seq4
599bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_serine/threonine-protein_kinase_PRP4_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005694 C chromosome
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0008380 P RNA splicing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
5590 O_BomoSK15031_complete:A_BomoSK_comp13631_c0_seq5
559bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_serine/threonine-protein_kinase_PRP4_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005694 C chromosome
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0008380 P RNA splicing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
5591 O_BomoSK15032_complete:A_BomoSK_comp13631_c0_seq6
599bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_serine/threonine-protein_kinase_PRP4_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005694 C chromosome
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0008380 P RNA splicing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
5592 O_BomoSK15033_complete:A_BomoSK_comp13631_c0_seq7
559bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_serine/threonine-protein_kinase_PRP4_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005694 C chromosome
GO:0006397 P mRNA processing
GO:0006468 P protein phosphorylation
GO:0008380 P RNA splicing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
5593 O_BomoSK15034_complete:A_BomoSK_comp13633_c0_seq1
746bp
 PREDICTED:_DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009408 P response to heat
GO:0010213 P non-photoreactive DNA repair
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5594 O_BomoSK15035_complete:A_BomoSK_comp13633_c0_seq1
136bp
 ABC_transporter_ATP-binding_protein_[Prevotella_sp._oral_taxon_317]
5595 O_BomoSK15036_complete:A_BomoSK_comp13633_c0_seq2
952bp
 PREDICTED:_DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009408 P response to heat
GO:0010213 P non-photoreactive DNA repair
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5596 O_BomoSK15037_complete:A_BomoSK_comp13633_c0_seq2
165bp
 PREDICTED:_DNA_repair_protein_complementing_XP-G_cells_[Papilio_polytes]
GO:0000405 F bubble DNA binding
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0005662 C DNA replication factor A complex
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006974 P cellular response to DNA damage stimulus
GO:0008340 P determination of adult lifespan
GO:0009411 P response to UV
GO:0009650 P UV protection
GO:0010225 P response to UV-C
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0035264 P multicellular organism growth
GO:0042803 F protein homodimerization activity
GO:0043066 P negative regulation of apoptotic process
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
5597 O_BomoSK15038_complete:A_BomoSK_comp13633_c0_seq2
136bp
 ABC_transporter_ATP-binding_protein_[Prevotella_sp._oral_taxon_317]
5598 O_BomoSK15039_complete:A_BomoSK_comp13633_c0_seq2
102bp
 hypothetical_protein_[Methanosarcina_mazei]
5599 O_BomoSK1503_complete:A_BomoSK_comp4318_c0_seq1
541bp
 PREDICTED:_glutamate_receptor_ionotropic,_delta-2_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004872 F signaling receptor activity
GO:0004970 F ionotropic glutamate receptor activity
GO:0005216 F ion channel activity
GO:0005234 F extracellularly glutamate-gated ion channel activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007157 P heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0008150 P biological_process
GO:0014069 C postsynaptic density
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021707 P cerebellar granule cell differentiation
GO:0030054 C cell junction
GO:0030165 F PDZ domain binding
GO:0034220 P ion transmembrane transport
GO:0034613 P cellular protein localization
GO:0035235 P ionotropic glutamate receptor signaling pathway
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
5600 O_BomoSK15040_complete:A_BomoSK_comp13633_c0_seq3
919bp
 PREDICTED:_DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]
GO:0000405 F bubble DNA binding
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004520 F endodeoxyribonuclease activity
GO:0005634 C nucleus
GO:0005662 C DNA replication factor A complex
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006289 P nucleotide-excision repair
GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006974 P cellular response to DNA damage stimulus
GO:0008340 P determination of adult lifespan
GO:0009411 P response to UV
GO:0009650 P UV protection
GO:0010225 P response to UV-C
GO:0016591 C RNA polymerase II, holoenzyme
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0035264 P multicellular organism growth
GO:0042803 F protein homodimerization activity
GO:0043066 P negative regulation of apoptotic process
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
5601 O_BomoSK15041_complete:A_BomoSK_comp13633_c0_seq3
154bp
 ABC_transporter_ATP-binding_protein_[Prevotella_sp._oral_taxon_317]
5602 O_BomoSK15042_complete:A_BomoSK_comp13633_c0_seq4
952bp
 PREDICTED:_DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009408 P response to heat
GO:0010213 P non-photoreactive DNA repair
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5603 O_BomoSK15043_complete:A_BomoSK_comp13633_c0_seq4
136bp
 ABC_transporter_ATP-binding_protein_[Prevotella_sp._oral_taxon_317]
5604 O_BomoSK15044_complete:A_BomoSK_comp13633_c0_seq4
102bp
 hypothetical_protein_[Methanosarcina_mazei]
5605 O_BomoSK15045_complete:A_BomoSK_comp13633_c0_seq5
952bp
 PREDICTED:_DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009408 P response to heat
GO:0010213 P non-photoreactive DNA repair
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5606 O_BomoSK15046_complete:A_BomoSK_comp13633_c0_seq5
154bp
 ABC_transporter_ATP-binding_protein_[Prevotella_sp._oral_taxon_317]
5607 O_BomoSK15047_complete:A_BomoSK_comp13633_c0_seq5
102bp
 hypothetical_protein_[Methanosarcina_mazei]
5608 O_BomoSK15048_complete:A_BomoSK_comp13633_c0_seq6
746bp
 PREDICTED:_DNA_repair_protein_complementing_XP-G_cells_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009408 P response to heat
GO:0010213 P non-photoreactive DNA repair
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
5609 O_BomoSK15049_complete:A_BomoSK_comp13633_c0_seq6
154bp
 ABC_transporter_ATP-binding_protein_[Prevotella_sp._oral_taxon_317]
5610 O_BomoSK1504_complete:A_BomoSK_comp4318_c0_seq1
132bp
 hypothetical_protein,_partial_[Tannerella_sp._oral_taxon_BU063]
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