SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5251 O_BomoSK14727_3prime_partial:A_BomoSK_comp13590_c2_seq3
177bp
 Hypothetical_protein_GLP15_1514_[Giardia_lamblia_P15]
5252 O_BomoSK14728_complete:A_BomoSK_comp13590_c2_seq3
117bp
 tRNA_threonylcarbamoyladenosine_biosynthesis_protein_TsaB_[Rhodococcus_sp._B7740]
5253 O_BomoSK14729_complete:A_BomoSK_comp13590_c2_seq4
129bp
 PREDICTED:_circadian_clock-controlled_protein-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005615 C extracellular space
GO:0007623 P circadian rhythm
GO:0032504 P multicellular organism reproduction
GO:0048511 P rhythmic process
5254 O_BomoSK1472_complete:A_BomoSK_comp4267_c0_seq1
667bp
 PREDICTED:_nostrin_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006897 P endocytosis
GO:0007165 P signal transduction
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0030666 C endocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0050999 P regulation of nitric-oxide synthase activity
5255 O_BomoSK14730_complete:A_BomoSK_comp13591_c0_seq1
245bp
 PREDICTED:_RNA-binding_protein_41-like_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005689 C U12-type spliceosomal complex
GO:0030626 F U12 snRNA binding
GO:0032502 P developmental process
GO:0097157 F pre-mRNA intronic binding
5256 O_BomoSK14731_5prime_partial:A_BomoSK_comp13591_c0_seq1
101bp
5257 O_BomoSK14732_complete:A_BomoSK_comp13591_c0_seq2
371bp
 hypothetical_protein_KGM_12871_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005689 C U12-type spliceosomal complex
GO:0030626 F U12 snRNA binding
GO:0032502 P developmental process
GO:0097157 F pre-mRNA intronic binding
5258 O_BomoSK14733_5prime_partial:A_BomoSK_comp13591_c0_seq2
101bp
5259 O_BomoSK14734_5prime_partial:A_BomoSK_comp13591_c0_seq3
101bp
5260 O_BomoSK14735_5prime_partial:A_BomoSK_comp13592_c0_seq1
667bp
 PREDICTED:_zinc_finger_protein_569-like_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
5261 O_BomoSK14736_complete:A_BomoSK_comp13592_c0_seq1
152bp
 hypothetical_protein_ALC57_06644,_partial_[Trachymyrmex_cornetzi]
5262 O_BomoSK14737_complete:A_BomoSK_comp13592_c0_seq1
121bp
 prepilin-type_N-terminal_cleavage/methylation_domain-containing_protein_[Gimesia_maris]
5263 O_BomoSK14738_complete:A_BomoSK_comp13592_c0_seq1
112bp
 PREDICTED:_uncharacterized_protein_LOC103792258_[Callithrix_jacchus]
5264 O_BomoSK14739_3prime_partial:A_BomoSK_comp13592_c0_seq2
390bp
 PREDICTED:_zinc_finger_protein_569-like_isoform_X3_[Bombyx_mori]
5265 O_BomoSK1473_3prime_partial:A_BomoSK_comp4267_c0_seq1
110bp
 PREDICTED:_maestro_heat-like_repeat-containing_protein_family_member_1,_partial_[Callorhinchus_milii]
5266 O_BomoSK14740_3prime_partial:A_BomoSK_comp13592_c0_seq3
386bp
 PREDICTED:_zinc_finger_protein_569-like_isoform_X3_[Bombyx_mori]
5267 O_BomoSK14741_5prime_partial:A_BomoSK_comp13592_c0_seq4
723bp
 PREDICTED:_zinc_finger_protein_569-like_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
5268 O_BomoSK14742_complete:A_BomoSK_comp13592_c0_seq4
121bp
 prepilin-type_N-terminal_cleavage/methylation_domain-containing_protein_[Gimesia_maris]
5269 O_BomoSK14743_complete:A_BomoSK_comp13592_c0_seq4
112bp
 PREDICTED:_uncharacterized_protein_LOC103792258_[Callithrix_jacchus]
5270 O_BomoSK14744_complete:A_BomoSK_comp13592_c0_seq4
111bp
 hypothetical_protein_ALC57_06644,_partial_[Trachymyrmex_cornetzi]
5271 O_BomoSK14745_5prime_partial:A_BomoSK_comp13593_c0_seq2
103bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
5272 O_BomoSK14746_5prime_partial:A_BomoSK_comp13594_c0_seq1
229bp
 PREDICTED:_nuclear_pore_complex_protein_Nup98-Nup96_isoform_X1_[Bombyx_mori]
GO:0000059 P obsolete protein import into nucleus, docking
GO:0000776 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0003723 F RNA binding
GO:0005215 F transporter activity
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005829 C cytosol
GO:0006260 P DNA replication
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0008139 F nuclear localization sequence binding
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034398 P telomere tethering at nuclear periphery
GO:0034399 C nuclear periphery
GO:0042277 F peptide binding
GO:0042405 C nuclear inclusion body
GO:0044614 C nuclear pore cytoplasmic filaments
GO:0044615 C nuclear pore nuclear basket
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
5273 O_BomoSK14747_5prime_partial:A_BomoSK_comp13594_c0_seq1
123bp
5274 O_BomoSK14748_5prime_partial:A_BomoSK_comp13594_c0_seq1
113bp
 olfactory_receptor_[Bombyx_mori]
5275 O_BomoSK14749_5prime_partial:A_BomoSK_comp13595_c0_seq1
285bp
 PREDICTED:_serine/arginine_repetitive_matrix_protein_2_isoform_X2_[Bombyx_mori]
5276 O_BomoSK1474_5prime_partial:A_BomoSK_comp4269_c0_seq2
160bp
 PREDICTED:_5'-3'_exoribonuclease_1_isoform_X2_[Bombyx_mori]
5277 O_BomoSK14750_3prime_partial:A_BomoSK_comp13595_c0_seq1
111bp
5278 O_BomoSK14751_5prime_partial:A_BomoSK_comp13595_c0_seq2
319bp
 PREDICTED:_serine/arginine_repetitive_matrix_protein_1_isoform_X3_[Bombyx_mori]
5279 O_BomoSK14752_3prime_partial:A_BomoSK_comp13595_c0_seq2
111bp
5280 O_BomoSK14753_complete:A_BomoSK_comp13596_c0_seq1
1109bp
 PREDICTED:_regulator_of_nonsense_transcripts_2_[Amyelois_transitella]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001889 P liver development
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006406 P mRNA export from nucleus
GO:0031100 P animal organ regeneration
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0048471 C perinuclear region of cytoplasm
previous next from show/33939

- SilkBase 1999-2023 -