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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4561 O_BomoSK14105_3prime_partial:A_BomoSK_comp13460_c0_seq1
458bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R_isoform_X3_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006417 P regulation of translation
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016032 P viral process
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
4562 O_BomoSK14106_3prime_partial:A_BomoSK_comp13460_c0_seq2
458bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R_isoform_X3_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006417 P regulation of translation
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016032 P viral process
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
4563 O_BomoSK14107_internal:A_BomoSK_comp13460_c0_seq3
271bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_Q_isoform_X5_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0090367 P negative regulation of mRNA modification
GO:1990635 C proximal dendrite
4564 O_BomoSK14108_complete:A_BomoSK_comp13461_c0_seq1
182bp
 PREDICTED:_calmodulin-A-like_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0046872 F metal ion binding
4565 O_BomoSK14109_complete:A_BomoSK_comp13461_c0_seq2
182bp
 PREDICTED:_calmodulin-A-like_[Bombyx_mori]
GO:0005509 F calcium ion binding
GO:0046872 F metal ion binding
4566 O_BomoSK1410_5prime_partial:A_BomoSK_comp4181_c0_seq1
137bp
4567 O_BomoSK14110_complete:A_BomoSK_comp13462_c1_seq3
607bp
 splicing_factor_proline-_and_glutamine-rich_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0007601 P visual perception
GO:0050896 P response to stimulus
4568 O_BomoSK14111_complete:A_BomoSK_comp13462_c1_seq3
110bp
4569 O_BomoSK14112_complete:A_BomoSK_comp13462_c1_seq3
102bp
4570 O_BomoSK14113_complete:A_BomoSK_comp13462_c1_seq4
642bp
 splicing_factor_proline-_and_glutamine-rich_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0007601 P visual perception
GO:0050896 P response to stimulus
4571 O_BomoSK14114_complete:A_BomoSK_comp13462_c1_seq4
110bp
4572 O_BomoSK14115_complete:A_BomoSK_comp13462_c1_seq4
102bp
4573 O_BomoSK14116_complete:A_BomoSK_comp13462_c1_seq5
607bp
 splicing_factor_proline-_and_glutamine-rich_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0007601 P visual perception
GO:0050896 P response to stimulus
4574 O_BomoSK14117_complete:A_BomoSK_comp13462_c1_seq5
110bp
4575 O_BomoSK14118_complete:A_BomoSK_comp13462_c1_seq5
102bp
4576 O_BomoSK14119_complete:A_BomoSK_comp13463_c0_seq1
639bp
 PREDICTED:_putative_ferric-chelate_reductase_1_homolog_[Amyelois_transitella]
GO:0000293 F ferric-chelate reductase activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
4577 O_BomoSK1411_3prime_partial:A_BomoSK_comp4181_c0_seq2
333bp
 PREDICTED:_PAX3-_and_PAX7-binding_protein_1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0014842 P regulation of skeletal muscle satellite cell proliferation
GO:0031062 P positive regulation of histone methylation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:2000288 P positive regulation of myoblast proliferation
4578 O_BomoSK14120_5prime_partial:A_BomoSK_comp13465_c0_seq1
322bp
 cytochrome_c1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0020037 F heme binding
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
4579 O_BomoSK14121_5prime_partial:A_BomoSK_comp13466_c0_seq1
412bp
 nucleic-acid-binding_protein_from_transposon_x-element_[Lasius_niger]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
4580 O_BomoSK14122_3prime_partial:A_BomoSK_comp13466_c0_seq1
394bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Microplitis_demolitor]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
4581 O_BomoSK14123_complete:A_BomoSK_comp13467_c1_seq1
288bp
 PREDICTED:_elongation_of_very_long_chain_fatty_acids_protein_AAEL008004-like_isoform_X1_[Plutella_xylostella]
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0030176 C integral component of endoplasmic reticulum membrane
4582 O_BomoSK14124_complete:A_BomoSK_comp13468_c0_seq1
1510bp
 PREDICTED:_uncharacterized_protein_LOC101744111_[Bombyx_mori]
4583 O_BomoSK14125_complete:A_BomoSK_comp13468_c0_seq1
178bp
4584 O_BomoSK14126_complete:A_BomoSK_comp13468_c0_seq1
142bp
 PREDICTED:_coiled-coil_domain-containing_protein_150_isoform_X5_[Pelodiscus_sinensis]
4585 O_BomoSK14127_complete:A_BomoSK_comp13468_c0_seq1
119bp
4586 O_BomoSK14128_complete:A_BomoSK_comp13468_c0_seq1
114bp
 hypothetical_protein_[Plasmodium_berghei_strain_ANKA]_[Plasmodium_berghei_ANKA]
4587 O_BomoSK14129_complete:A_BomoSK_comp13469_c0_seq1
504bp
 PREDICTED:_uncharacterized_transporter_C38C10.2-like_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0006820 P anion transport
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0055085 P transmembrane transport
4588 O_BomoSK1412_5prime_partial:A_BomoSK_comp4181_c0_seq2
137bp
4589 O_BomoSK14130_3prime_partial:A_BomoSK_comp13470_c0_seq1
890bp
 PREDICTED:_vascular_endothelial_growth_factor_receptor_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000186 P obsolete activation of MAPKK activity
GO:0001525 P angiogenesis
GO:0001666 P response to hypoxia
GO:0002548 P monocyte chemotaxis
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005021 F vascular endothelial growth factor-activated receptor activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005925 C focal adhesion
GO:0006468 P protein phosphorylation
GO:0006935 P chemotaxis
GO:0006940 P regulation of smooth muscle contraction
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0008284 P positive regulation of cell population proliferation
GO:0010863 P positive regulation of phospholipase C activity
GO:0014068 P positive regulation of phosphatidylinositol 3-kinase signaling
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016477 P cell migration
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0019838 F growth factor binding
GO:0030154 P cell differentiation
GO:0030335 P positive regulation of cell migration
GO:0030522 P intracellular receptor signaling pathway
GO:0030949 P positive regulation of vascular endothelial growth factor receptor signaling pathway
GO:0035924 P cellular response to vascular endothelial growth factor stimulus
GO:0036323 P vascular endothelial growth factor receptor-1 signaling pathway
GO:0036326 F vascular endothelial growth factor-activated receptor activity
GO:0036327 F vascular endothelial growth factor-activated receptor activity
GO:0036332 F placental growth factor-activated receptor activity
GO:0038084 P vascular endothelial growth factor signaling pathway
GO:0043235 C receptor complex
GO:0043406 P positive regulation of MAP kinase activity
GO:0043410 P positive regulation of MAPK cascade
GO:0043552 P positive regulation of phosphatidylinositol 3-kinase activity
GO:0045766 P positive regulation of angiogenesis
GO:0046777 P protein autophosphorylation
GO:0048010 P vascular endothelial growth factor receptor signaling pathway
GO:0048514 P blood vessel morphogenesis
GO:0048598 P embryonic morphogenesis
GO:0048661 P positive regulation of smooth muscle cell proliferation
4590 O_BomoSK14131_complete:A_BomoSK_comp13470_c0_seq1
112bp
 uncharacterized_protein_BN506_02175_[Bacteroides_cellulosilyticus_CAG:158]
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