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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4531 O_BomoSK14079_complete:A_BomoSK_comp13449_c0_seq1
1002bp
 PREDICTED:_collagen_alpha-1(XVIII)_chain-like_[Bombyx_mori]
GO:0001501 P skeletal system development
GO:0001568 P blood vessel development
GO:0005201 F extracellular matrix structural constituent
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005584 C collagen type I trimer
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007266 P Rho protein signal transduction
GO:0008217 P regulation of blood pressure
GO:0030199 P collagen fibril organization
GO:0030674 F protein-macromolecule adaptor activity
GO:0031012 C extracellular matrix
GO:0042802 F identical protein binding
GO:0043589 P skin morphogenesis
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
GO:0048407 F platelet-derived growth factor binding
GO:0070062 C extracellular exosome
GO:0070208 P protein heterotrimerization
GO:0071230 P cellular response to amino acid stimulus
4532 O_BomoSK1407_5prime_partial:A_BomoSK_comp4179_c0_seq1
147bp
 PREDICTED:_protein_CASC3_isoform_X2_[Bombyx_mori]
4533 O_BomoSK14080_complete:A_BomoSK_comp13449_c0_seq2
695bp
 PREDICTED:_collagen_alpha-1(XVIII)_chain-like_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0001569 P branching involved in blood vessel morphogenesis
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005587 C collagen type IV trimer
GO:0005604 C basement membrane
GO:0007420 P brain development
GO:0007528 P neuromuscular junction development
GO:0030198 P extracellular matrix organization
GO:0030855 P epithelial cell differentiation
GO:0031012 C extracellular matrix
GO:0048407 F platelet-derived growth factor binding
GO:0048514 P blood vessel morphogenesis
GO:0061304 P retinal blood vessel morphogenesis
GO:0061333 P renal tubule morphogenesis
GO:0071230 P cellular response to amino acid stimulus
GO:0071711 P basement membrane organization
4534 O_BomoSK14081_complete:A_BomoSK_comp13449_c0_seq3
1009bp
 PREDICTED:_collagen_alpha-1(XVIII)_chain-like_[Bombyx_mori]
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005604 C basement membrane
4535 O_BomoSK14082_complete:A_BomoSK_comp13450_c0_seq1
404bp
 PREDICTED:_MAP_kinse-ERK_kinase_isoform_X1_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000187 P obsolete activation of MAPK activity
GO:0000793 C condensed chromosome
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0004708 F MAP kinase kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007362 P terminal region determination
GO:0008595 P anterior/posterior axis specification, embryo
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0033314 P mitotic DNA replication checkpoint signaling
GO:0040018 P positive regulation of multicellular organism growth
GO:0042386 P hemocyte differentiation
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0071481 P cellular response to X-ray
4536 O_BomoSK14083_complete:A_BomoSK_comp13450_c0_seq2
404bp
 PREDICTED:_MAP_kinse-ERK_kinase_isoform_X1_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000187 P obsolete activation of MAPK activity
GO:0000793 C condensed chromosome
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0004708 F MAP kinase kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007362 P terminal region determination
GO:0008595 P anterior/posterior axis specification, embryo
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0033314 P mitotic DNA replication checkpoint signaling
GO:0040018 P positive regulation of multicellular organism growth
GO:0042386 P hemocyte differentiation
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0071481 P cellular response to X-ray
4537 O_BomoSK14084_3prime_partial:A_BomoSK_comp13452_c0_seq1
166bp
 Uncharacterized_protein_C1orf131_[Papilio_xuthus]
GO:0044822 F RNA binding
4538 O_BomoSK14085_complete:A_BomoSK_comp13453_c0_seq1
289bp
 hypothetical_protein_KGM_18080_[Danaus_plexippus]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
4539 O_BomoSK14086_complete:A_BomoSK_comp13456_c1_seq1
723bp
 PREDICTED:_cGMP-dependent_protein_kinase,_isozyme_2_forms_cD4/T1/T3A/T3B-like_isoform_X3_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004690 F cyclic nucleotide-dependent protein kinase activity
GO:0004692 F cGMP-dependent protein kinase activity
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007614 P short-term memory
GO:0007616 P long-term memory
GO:0007631 P feeding behavior
GO:0008016 P regulation of heart contraction
GO:0008345 P larval locomotory behavior
GO:0009744 P response to sucrose
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019233 P sensory perception of pain
GO:0030536 P larval feeding behavior
GO:0030553 F cGMP binding
GO:0032095 P regulation of response to food
GO:0046959 P habituation
4540 O_BomoSK14087_complete:A_BomoSK_comp13456_c1_seq1
135bp
 PREDICTED:_centrosome-associated_protein_350-like_[Zonotrichia_albicollis]
4541 O_BomoSK14088_complete:A_BomoSK_comp13456_c1_seq1
124bp
 putative_5'(3')-deoxyribonucleotidase_[Acanthamoeba_polyphaga_mimivirus]
4542 O_BomoSK14089_complete:A_BomoSK_comp13456_c1_seq3
1059bp
 PREDICTED:_cGMP-dependent_protein_kinase,_isozyme_2_forms_cD5/T2-like_isoform_X1_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004690 F cyclic nucleotide-dependent protein kinase activity
GO:0004692 F cGMP-dependent protein kinase activity
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007614 P short-term memory
GO:0007616 P long-term memory
GO:0007631 P feeding behavior
GO:0008016 P regulation of heart contraction
GO:0008345 P larval locomotory behavior
GO:0009744 P response to sucrose
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019233 P sensory perception of pain
GO:0030536 P larval feeding behavior
GO:0030553 F cGMP binding
GO:0032095 P regulation of response to food
GO:0046959 P habituation
4543 O_BomoSK1408_complete:A_BomoSK_comp4180_c0_seq1
359bp
 PREDICTED:_uncharacterized_protein_LOC106122376_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0008150 P biological_process
4544 O_BomoSK14090_complete:A_BomoSK_comp13456_c1_seq3
124bp
 putative_5'(3')-deoxyribonucleotidase_[Acanthamoeba_polyphaga_mimivirus]
4545 O_BomoSK14091_complete:A_BomoSK_comp13456_c1_seq4
745bp
 AF465600_1_PKG-Ib_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004690 F cyclic nucleotide-dependent protein kinase activity
GO:0004692 F cGMP-dependent protein kinase activity
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007614 P short-term memory
GO:0007616 P long-term memory
GO:0007631 P feeding behavior
GO:0008016 P regulation of heart contraction
GO:0008345 P larval locomotory behavior
GO:0009744 P response to sucrose
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019233 P sensory perception of pain
GO:0030536 P larval feeding behavior
GO:0030553 F cGMP binding
GO:0032095 P regulation of response to food
GO:0046959 P habituation
4546 O_BomoSK14092_complete:A_BomoSK_comp13456_c1_seq4
135bp
 PREDICTED:_centrosome-associated_protein_350-like_[Zonotrichia_albicollis]
4547 O_BomoSK14093_complete:A_BomoSK_comp13456_c1_seq4
124bp
 putative_5'(3')-deoxyribonucleotidase_[Acanthamoeba_polyphaga_mimivirus]
4548 O_BomoSK14094_complete:A_BomoSK_comp13456_c1_seq5
1059bp
 PREDICTED:_cGMP-dependent_protein_kinase,_isozyme_2_forms_cD5/T2-like_isoform_X1_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004690 F cyclic nucleotide-dependent protein kinase activity
GO:0004692 F cGMP-dependent protein kinase activity
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007614 P short-term memory
GO:0007616 P long-term memory
GO:0007631 P feeding behavior
GO:0008016 P regulation of heart contraction
GO:0008345 P larval locomotory behavior
GO:0009744 P response to sucrose
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019233 P sensory perception of pain
GO:0030536 P larval feeding behavior
GO:0030553 F cGMP binding
GO:0032095 P regulation of response to food
GO:0046959 P habituation
4549 O_BomoSK14095_complete:A_BomoSK_comp13456_c1_seq5
124bp
 putative_5'(3')-deoxyribonucleotidase_[Acanthamoeba_polyphaga_mimivirus]
4550 O_BomoSK14096_5prime_partial:A_BomoSK_comp13457_c1_seq8
388bp
 PREDICTED:_mitogen-activated_protein_kinase_kinase_kinase_kinase_5_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000185 P obsolete activation of MAPKKK activity
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0007257 P obsolete activation of JUN kinase activity
GO:0008349 F MAP kinase kinase kinase kinase activity
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0035556 P intracellular signal transduction
4551 O_BomoSK14097_complete:A_BomoSK_comp13459_c0_seq1
933bp
 PREDICTED:_UPF0505_protein_C16orf62_isoform_X1_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0030904 C retromer complex
GO:0042147 P retrograde transport, endosome to Golgi
4552 O_BomoSK14098_complete:A_BomoSK_comp13459_c0_seq1
113bp
 hypothetical_protein_ANO11243_039310_[fungal_sp._No.11243]
4553 O_BomoSK14099_complete:A_BomoSK_comp13459_c0_seq2
550bp
 PREDICTED:_UPF0505_protein_C16orf62_isoform_X1_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0030904 C retromer complex
GO:0042147 P retrograde transport, endosome to Golgi
4554 O_BomoSK1409_3prime_partial:A_BomoSK_comp4181_c0_seq1
223bp
 PREDICTED:_PAX3-_and_PAX7-binding_protein_1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0014842 P regulation of skeletal muscle satellite cell proliferation
GO:0031062 P positive regulation of histone methylation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:2000288 P positive regulation of myoblast proliferation
4555 O_BomoSK140_internal:A_BomoSK_comp451_c0_seq1
210bp
 PREDICTED:_uncharacterized_protein_LOC101739897_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000775 C chromosome, centromeric region
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005722 C beta-heterochromatin
GO:0006281 P DNA repair
GO:0006336 P DNA replication-independent chromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007399 P nervous system development
GO:0007411 P axon guidance
GO:0008347 P glial cell migration
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0032508 P DNA duplex unwinding
GO:0042585 C germinal vesicle
GO:0046328 P regulation of JNK cascade
GO:0051276 P chromosome organization
GO:0070868 P obsolete heterochromatin organization involved in chromatin silencing
GO:0097193 P intrinsic apoptotic signaling pathway
4556 O_BomoSK14100_complete:A_BomoSK_comp13459_c0_seq2
156bp
 PREDICTED:_UPF0505_protein_C16orf62_isoform_X3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
4557 O_BomoSK14101_complete:A_BomoSK_comp13459_c0_seq2
113bp
 hypothetical_protein_ANO11243_039310_[fungal_sp._No.11243]
4558 O_BomoSK14102_5prime_partial:A_BomoSK_comp13459_c0_seq3
445bp
 PREDICTED:_UPF0505_protein_C16orf62_isoform_X3_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0030904 C retromer complex
GO:0042147 P retrograde transport, endosome to Golgi
4559 O_BomoSK14103_complete:A_BomoSK_comp13459_c0_seq3
156bp
 PREDICTED:_UPF0505_protein_C16orf62_isoform_X3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
4560 O_BomoSK14104_5prime_partial:A_BomoSK_comp13459_c0_seq4
828bp
 PREDICTED:_UPF0505_protein_C16orf62_isoform_X3_[Bombyx_mori]
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0008565 F obsolete protein transporter activity
GO:0015031 P protein transport
GO:0030904 C retromer complex
GO:0042147 P retrograde transport, endosome to Golgi
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