SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
451 O_BomoSK10406_complete:A_BomoSK_comp12184_c0_seq1
193bp
 hypothetical_protein_TcasGA2_TC009811_[Tribolium_castaneum]
452 O_BomoSK10407_3prime_partial:A_BomoSK_comp12185_c0_seq1
121bp
 PREDICTED:_uncharacterized_protein_LOC101744940_[Bombyx_mori]
453 O_BomoSK10408_3prime_partial:A_BomoSK_comp12185_c0_seq2
262bp
 PREDICTED:_uncharacterized_protein_LOC101744940_[Bombyx_mori]
454 O_BomoSK10409_complete:A_BomoSK_comp12186_c0_seq1
210bp
 PREDICTED:_zinc_finger_protein_674_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006415 P translational termination
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0008276 F protein methyltransferase activity
GO:0016740 F transferase activity
GO:0030307 P positive regulation of cell growth
GO:0032259 P methylation
GO:0043234 C protein-containing complex
455 O_BomoSK1040_complete:A_BomoSK_comp3830_c0_seq1
152bp
456 O_BomoSK10410_complete:A_BomoSK_comp12186_c0_seq1
153bp
 SNARE-associated_protein_Snapin_[Operophtera_brumata]
GO:0005515 F protein binding
GO:0006886 P intracellular protein transport
GO:0007269 P neurotransmitter secretion
GO:0008021 C synaptic vesicle
GO:0016079 P synaptic vesicle exocytosis
GO:0016082 P synaptic vesicle priming
GO:0031083 C BLOC-1 complex
GO:0032844 P homeostatic process
457 O_BomoSK10411_complete:A_BomoSK_comp12186_c0_seq2
217bp
 glutathione_S-transferase_1,_isoform_C-like_[Bombyx_mori]
GO:0004364 F glutathione transferase activity
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016829 F lyase activity
GO:0018833 F DDT-dehydrochlorinase activity
458 O_BomoSK10412_complete:A_BomoSK_comp12186_c0_seq2
210bp
 PREDICTED:_zinc_finger_protein_674_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006415 P translational termination
GO:0006479 P protein methylation
GO:0008168 F methyltransferase activity
GO:0008276 F protein methyltransferase activity
GO:0016740 F transferase activity
GO:0030307 P positive regulation of cell growth
GO:0032259 P methylation
GO:0043234 C protein-containing complex
459 O_BomoSK10413_complete:A_BomoSK_comp12186_c0_seq2
153bp
 SNARE-associated_protein_Snapin_[Operophtera_brumata]
GO:0005515 F protein binding
GO:0006886 P intracellular protein transport
GO:0007269 P neurotransmitter secretion
GO:0008021 C synaptic vesicle
GO:0016079 P synaptic vesicle exocytosis
GO:0016082 P synaptic vesicle priming
GO:0031083 C BLOC-1 complex
GO:0032844 P homeostatic process
460 O_BomoSK10414_5prime_partial:A_BomoSK_comp12187_c1_seq1
438bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_8-like_[Amyelois_transitella]
GO:0000281 P mitotic cytokinesis
GO:0001669 C acrosomal vesicle
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007032 P endosome organization
GO:0007049 P cell cycle
GO:0007265 P Ras protein signal transduction
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0017124 F SH3 domain binding
GO:0019897 C extrinsic component of plasma membrane
GO:0030496 C midbody
GO:0031313 C extrinsic component of endosome membrane
GO:0036459 F thiol-dependent deubiquitinase
GO:0070536 P protein K63-linked deubiquitination
GO:0071108 P protein K48-linked deubiquitination
461 O_BomoSK10415_complete:A_BomoSK_comp12187_c1_seq1
110bp
462 O_BomoSK10416_5prime_partial:A_BomoSK_comp12187_c1_seq1
105bp
463 O_BomoSK10417_5prime_partial:A_BomoSK_comp12188_c0_seq1
489bp
 longer_ecdysteroid-phosphate_phosphatase_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006469 P negative regulation of protein kinase activity
GO:0009968 P negative regulation of signal transduction
GO:0016787 F hydrolase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045670 P regulation of osteoclast differentiation
GO:0045671 P negative regulation of osteoclast differentiation
GO:0045779 P negative regulation of bone resorption
GO:0051279 P regulation of release of sequestered calcium ion into cytosol
GO:0090331 P negative regulation of platelet aggregation
464 O_BomoSK10418_5prime_partial:A_BomoSK_comp12188_c0_seq1
133bp
465 O_BomoSK10419_complete:A_BomoSK_comp12188_c0_seq2
448bp
 longer_ecdysteroid-phosphate_phosphatase_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006469 P negative regulation of protein kinase activity
GO:0009968 P negative regulation of signal transduction
GO:0016787 F hydrolase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0045670 P regulation of osteoclast differentiation
GO:0045671 P negative regulation of osteoclast differentiation
GO:0045779 P negative regulation of bone resorption
GO:0051279 P regulation of release of sequestered calcium ion into cytosol
GO:0090331 P negative regulation of platelet aggregation
466 O_BomoSK1041_complete:A_BomoSK_comp3830_c0_seq1
130bp
 hypothetical_protein_FE78DRAFT_85730_[Acidomyces_richmondensis]
467 O_BomoSK10420_5prime_partial:A_BomoSK_comp12188_c0_seq2
133bp
468 O_BomoSK10421_internal:A_BomoSK_comp12188_c0_seq3
118bp
 longer_ecdysteroid-phosphate_phosphatase_[Bombyx_mori]
GO:0005829 C cytosol
GO:0016311 P dephosphorylation
GO:0016791 F phosphatase activity
469 O_BomoSK10422_internal:A_BomoSK_comp12189_c0_seq1
358bp
 PREDICTED:_zinc_transporter_2-like_[Bombyx_mori]
GO:0005385 F zinc ion transmembrane transporter activity
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005770 C late endosome
GO:0005773 C vacuole
GO:0005774 C vacuolar membrane
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006829 P zinc ion transport
GO:0008324 F cation transmembrane transporter activity
GO:0010043 P response to zinc ion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0055085 P transmembrane transport
GO:0061088 P regulation of sequestering of zinc ion
GO:0061090 P positive regulation of sequestering of zinc ion
GO:0071577 P zinc ion transmembrane transport
470 O_BomoSK10423_5prime_partial:A_BomoSK_comp12189_c0_seq1
142bp
 Putative_Competence_protein_[Oceanicola_granulosus_HTCC2516]
471 O_BomoSK10424_internal:A_BomoSK_comp12189_c1_seq2
158bp
 ethanolamine_ammonia-lyase_[Cellulosilyticum_lentocellum]
472 O_BomoSK10425_5prime_partial:A_BomoSK_comp12189_c1_seq2
152bp
 PREDICTED:_zinc_transporter_2-like_[Bombyx_mori]
GO:0005385 F zinc ion transmembrane transporter activity
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006829 P zinc ion transport
GO:0008324 F cation transmembrane transporter activity
GO:0010008 C endosome membrane
GO:0010043 P response to zinc ion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0055085 P transmembrane transport
GO:0061088 P regulation of sequestering of zinc ion
GO:0071577 P zinc ion transmembrane transport
GO:0098655 P cation transmembrane transport
473 O_BomoSK10426_5prime_partial:A_BomoSK_comp12189_c1_seq2
138bp
 hypothetical_protein_[Hydrogenovibrio_marinus]
474 O_BomoSK10427_5prime_partial:A_BomoSK_comp12189_c1_seq2
105bp
 MULTISPECIES:_hypothetical_protein_[Streptomyces]
475 O_BomoSK10428_complete:A_BomoSK_comp12190_c0_seq1
293bp
 PREDICTED:_nuclear_transcription_factor_Y_subunit_alpha_[Amyelois_transitella]
GO:0001046 F core promoter sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016602 C CCAAT-binding factor complex
GO:0032993 C protein-DNA complex
GO:0044212 F transcription cis-regulatory region binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
476 O_BomoSK10429_internal:A_BomoSK_comp12191_c0_seq1
502bp
 PREDICTED:_ESF1_homolog_[Papilio_xuthus]
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0044822 F RNA binding
477 O_BomoSK1042_5prime_partial:A_BomoSK_comp3832_c0_seq1
1018bp
 PREDICTED:_PHD_finger_protein_14_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0008270 F zinc ion binding
GO:0008285 P negative regulation of cell population proliferation
GO:0046872 F metal ion binding
GO:0048286 P lung alveolus development
GO:0072201 P negative regulation of mesenchymal cell proliferation
GO:2000584 P negative regulation of platelet-derived growth factor receptor-alpha signaling pathway
GO:2000791 P negative regulation of mesenchymal cell proliferation involved in lung development
478 O_BomoSK10430_3prime_partial:A_BomoSK_comp12191_c0_seq2
476bp
 PREDICTED:_ESF1_homolog_[Papilio_xuthus]
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0044822 F RNA binding
479 O_BomoSK10431_internal:A_BomoSK_comp12191_c1_seq1
203bp
 hypothetical_protein_KGM_12909_[Danaus_plexippus]
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0044822 F RNA binding
480 O_BomoSK10432_complete:A_BomoSK_comp12192_c0_seq3
389bp
 PREDICTED:_venom_acid_phosphatase_Acph-1-like_[Papilio_polytes]
GO:0003993 F acid phosphatase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0006144 P purine nucleobase metabolic process
GO:0006772 P thiamine metabolic process
GO:0008253 F 5'-nucleotidase activity
GO:0009117 P nucleotide metabolic process
GO:0012506 C vesicle membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030175 C filopodium
GO:0042131 F thiamine phosphate phosphatase activity
GO:0042802 F identical protein binding
GO:0046085 P adenosine metabolic process
GO:0051930 P regulation of sensory perception of pain
GO:0052642 F lysophosphatidic acid phosphatase activity
GO:0060168 P positive regulation of adenosine receptor signaling pathway
GO:0070062 C extracellular exosome
previous next from show/33939

- SilkBase 1999-2023 -