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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3991 O_BomoSK13593_complete:A_BomoSK_comp13313_c0_seq4
537bp
 putative_Na-K-Cl_cotransporter_[Danaus_plexippus]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006813 P potassium ion transport
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
3992 O_BomoSK13594_complete:A_BomoSK_comp13313_c0_seq4
163bp
 ABC_transporter_permease_[Pseudorhodobacter_antarcticus]
3993 O_BomoSK13595_complete:A_BomoSK_comp13313_c0_seq4
102bp
 putative_Na-K-Cl_cotransporter,_partial_[Operophtera_brumata]
3994 O_BomoSK13596_3prime_partial:A_BomoSK_comp13314_c0_seq1
823bp
 PREDICTED:_transcription_elongation_factor_SPT5_isoform_X1_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000176 C nuclear exosome (RNase complex)
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007052 P mitotic spindle organization
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007549 P dosage compensation
GO:0008023 C transcription elongation factor complex
GO:0032044 C DSIF complex
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032785 P negative regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0035101 C FACT complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
3995 O_BomoSK13597_5prime_partial:A_BomoSK_comp13314_c0_seq1
191bp
3996 O_BomoSK13598_complete:A_BomoSK_comp13314_c0_seq1
143bp
 hypothetical_protein_[Granulicella_mallensis]
3997 O_BomoSK13599_complete:A_BomoSK_comp13315_c0_seq1
740bp
 PREDICTED:_hepatoma-derived_growth_factor-related_protein_3_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007026 P negative regulation of microtubule depolymerization
GO:0008017 F microtubule binding
GO:0008083 F growth factor activity
GO:0008283 P cell population proliferation
GO:0015631 F tubulin binding
GO:0031175 P neuron projection development
GO:0046785 P microtubule polymerization
3998 O_BomoSK1359_complete:A_BomoSK_comp4134_c0_seq1
700bp
 Protein_fat-free-like_protein_[Operophtera_brumata]
GO:0000938 C GARP complex
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0032456 P endocytic recycling
3999 O_BomoSK135_complete:A_BomoSK_comp422_c1_seq1
134bp
 PREDICTED:_zinc_transporter_ZIP3_[Amyelois_transitella]
GO:0005385 F zinc ion transmembrane transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006829 P zinc ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030001 P metal ion transport
GO:0046873 F metal ion transmembrane transporter activity
GO:0055085 P transmembrane transport
GO:0071577 P zinc ion transmembrane transport
4000 O_BomoSK13600_complete:A_BomoSK_comp13315_c0_seq2
723bp
 PREDICTED:_hepatoma-derived_growth_factor-related_protein_3_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007026 P negative regulation of microtubule depolymerization
GO:0008017 F microtubule binding
GO:0008083 F growth factor activity
GO:0008283 P cell population proliferation
GO:0015631 F tubulin binding
GO:0031175 P neuron projection development
GO:0046785 P microtubule polymerization
4001 O_BomoSK13601_5prime_partial:A_BomoSK_comp13316_c0_seq1
364bp
4002 O_BomoSK13602_5prime_partial:A_BomoSK_comp13316_c0_seq2
133bp
 polysaccharide_biosynthesis_protein_GumN_[Paenibacillus_sp._SIT18]
4003 O_BomoSK13603_complete:A_BomoSK_comp13318_c0_seq1
260bp
 Rad51_homolog_[Bombyx_mori]
GO:0000150 F DNA strand exchange activity
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000400 F four-way junction DNA binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000730 P DNA recombinase assembly
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0000784 C chromosome, telomeric region
GO:0000785 C chromatin
GO:0000793 C condensed chromosome
GO:0000794 C condensed nuclear chromosome
GO:0000800 C lateral element
GO:0001932 P regulation of protein phosphorylation
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004520 F endodeoxyribonuclease activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006259 P DNA metabolic process
GO:0006268 P DNA unwinding involved in DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006312 P mitotic recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007126 P meiotic cell cycle
GO:0007127 P meiosis I
GO:0007131 P reciprocal meiotic recombination
GO:0008022 F protein C-terminus binding
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0009636 P response to toxic substance
GO:0010165 P response to X-ray
GO:0010569 P regulation of double-strand break repair via homologous recombination
GO:0010833 P telomere maintenance via telomere lengthening
GO:0014070 P response to organic cyclic compound
GO:0016605 C PML body
GO:0031297 P replication fork processing
GO:0032200 P telomere organization
GO:0035861 C site of double-strand break
GO:0042148 P strand invasion
GO:0042493 P response to xenobiotic stimulus
GO:0042802 F identical protein binding
GO:0043142 F single-stranded DNA helicase activity
GO:0048471 C perinuclear region of cytoplasm
GO:0051106 P positive regulation of DNA ligation
GO:0051260 P protein homooligomerization
GO:0070182 F DNA polymerase binding
GO:0070192 P chromosome organization involved in meiotic cell cycle
GO:0071312 P cellular response to alkaloid
GO:0071479 P cellular response to ionizing radiation
GO:0071480 P cellular response to gamma radiation
GO:0072711 P cellular response to hydroxyurea
GO:0072719 P cellular response to cisplatin
GO:0072757 P cellular response to camptothecin
GO:1902521 P response to etoposide
GO:1990414 P replication-born double-strand break repair via sister chromatid exchange
GO:1990426 P mitotic recombination-dependent replication fork processing
4004 O_BomoSK13604_complete:A_BomoSK_comp13319_c0_seq1
439bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_RNA-binding_protein_NOB1_[Bombyx_mori]
GO:0000469 P cleavage involved in rRNA processing
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0007601 P visual perception
GO:0030490 P maturation of SSU-rRNA
GO:0030688 C preribosome, small subunit precursor
GO:0042274 P ribosomal small subunit biogenesis
GO:0046872 F metal ion binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
4005 O_BomoSK13605_complete:A_BomoSK_comp13319_c0_seq1
277bp
 PREDICTED:_UPF0528_protein_CG10038_[Amyelois_transitella]
GO:0005576 C extracellular region
4006 O_BomoSK13606_complete:A_BomoSK_comp13319_c0_seq2
439bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_RNA-binding_protein_NOB1_[Bombyx_mori]
GO:0000469 P cleavage involved in rRNA processing
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0007601 P visual perception
GO:0030490 P maturation of SSU-rRNA
GO:0030688 C preribosome, small subunit precursor
GO:0042274 P ribosomal small subunit biogenesis
GO:0046872 F metal ion binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
4007 O_BomoSK13607_complete:A_BomoSK_comp13319_c0_seq3
439bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_RNA-binding_protein_NOB1_[Bombyx_mori]
GO:0000469 P cleavage involved in rRNA processing
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0007601 P visual perception
GO:0030490 P maturation of SSU-rRNA
GO:0030688 C preribosome, small subunit precursor
GO:0042274 P ribosomal small subunit biogenesis
GO:0046872 F metal ion binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
4008 O_BomoSK13608_complete:A_BomoSK_comp13319_c0_seq3
270bp
 PREDICTED:_UPF0528_protein_CG10038_[Amyelois_transitella]
GO:0005576 C extracellular region
4009 O_BomoSK13609_complete:A_BomoSK_comp13319_c0_seq4
439bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_RNA-binding_protein_NOB1_[Bombyx_mori]
GO:0000469 P cleavage involved in rRNA processing
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0007601 P visual perception
GO:0030490 P maturation of SSU-rRNA
GO:0030688 C preribosome, small subunit precursor
GO:0042274 P ribosomal small subunit biogenesis
GO:0046872 F metal ion binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
4010 O_BomoSK1360_3prime_partial:A_BomoSK_comp4135_c0_seq1
469bp
 PREDICTED:_neurogenic_protein_mastermind-like_isoform_X1_[Papilio_machaon]
GO:0003007 P heart morphogenesis
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0007219 P Notch signaling pathway
GO:0007275 P multicellular organism development
GO:0007398 P ectoderm development
GO:0007399 P nervous system development
GO:0007418 P ventral midline development
GO:0007475 P apposition of dorsal and ventral imaginal disc-derived wing surfaces
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007500 P mesodermal cell fate determination
GO:0008356 P asymmetric cell division
GO:0008407 P chaeta morphogenesis
GO:0008587 P imaginal disc-derived wing margin morphogenesis
GO:0016607 C nuclear speck
GO:0030154 P cell differentiation
GO:0030707 P ovarian follicle cell development
GO:0030718 P germ-line stem cell population maintenance
GO:0035019 P somatic stem cell population maintenance
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048749 P compound eye development
4011 O_BomoSK13610_complete:A_BomoSK_comp13319_c0_seq5
439bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_RNA-binding_protein_NOB1_[Bombyx_mori]
GO:0000469 P cleavage involved in rRNA processing
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0007601 P visual perception
GO:0030490 P maturation of SSU-rRNA
GO:0030688 C preribosome, small subunit precursor
GO:0042274 P ribosomal small subunit biogenesis
GO:0046872 F metal ion binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
4012 O_BomoSK13611_complete:A_BomoSK_comp13319_c0_seq5
322bp
 PREDICTED:_UPF0528_protein_CG10038_[Amyelois_transitella]
GO:0005576 C extracellular region
4013 O_BomoSK13612_complete:A_BomoSK_comp13319_c0_seq6
439bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_RNA-binding_protein_NOB1_[Bombyx_mori]
GO:0000469 P cleavage involved in rRNA processing
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0007601 P visual perception
GO:0030490 P maturation of SSU-rRNA
GO:0030688 C preribosome, small subunit precursor
GO:0042274 P ribosomal small subunit biogenesis
GO:0046872 F metal ion binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
4014 O_BomoSK13613_complete:A_BomoSK_comp13319_c0_seq6
329bp
 PREDICTED:_UPF0528_protein_CG10038_[Amyelois_transitella]
GO:0005576 C extracellular region
4015 O_BomoSK13614_5prime_partial:A_BomoSK_comp13320_c0_seq1
867bp
 PREDICTED:_polynucleotide_5'-hydroxyl-kinase_NOL9_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000448 P cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0051731 F polynucleotide 5'-hydroxyl-kinase activity
4016 O_BomoSK13615_complete:A_BomoSK_comp13320_c0_seq1
193bp
 ras-like_GTP-binding_protein_Rho1_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000281 P mitotic cytokinesis
GO:0001736 P establishment of planar polarity
GO:0001737 P establishment of imaginal disc-derived wing hair orientation
GO:0001745 P compound eye morphogenesis
GO:0003779 F actin binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006897 P endocytosis
GO:0006974 P cellular response to DNA damage stimulus
GO:0007010 P cytoskeleton organization
GO:0007015 P actin filament organization
GO:0007164 P establishment of tissue polarity
GO:0007165 P signal transduction
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007254 P JNK cascade
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007349 P cellularization
GO:0007368 P determination of left/right symmetry
GO:0007369 P gastrulation
GO:0007370 P ventral furrow formation
GO:0007374 P posterior midgut invagination
GO:0007377 P germ-band extension
GO:0007391 P dorsal closure
GO:0007395 P dorsal closure, spreading of leading edge cells
GO:0007405 P neuroblast proliferation
GO:0007411 P axon guidance
GO:0007422 P peripheral nervous system development
GO:0007424 P open tracheal system development
GO:0007435 P salivary gland morphogenesis
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007601 P visual perception
GO:0008045 P motor neuron axon guidance
GO:0008347 P glial cell migration
GO:0008354 P germ cell migration
GO:0010004 P gastrulation involving germ band extension
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016203 P muscle attachment
GO:0016318 P ommatidial rotation
GO:0016324 C apical plasma membrane
GO:0016476 P regulation of embryonic cell shape
GO:0019900 F kinase binding
GO:0030036 P actin cytoskeleton organization
GO:0030239 P myofibril assembly
GO:0030334 P regulation of cell migration
GO:0030589 P pseudocleavage involved in syncytial blastoderm formation
GO:0030866 P cortical actin cytoskeleton organization
GO:0030950 P establishment or maintenance of actin cytoskeleton polarity
GO:0031532 P actin cytoskeleton reorganization
GO:0034613 P cellular protein localization
GO:0035006 P melanization defense response
GO:0035099 P hemocyte migration
GO:0035147 P branch fusion, open tracheal system
GO:0035149 P lumen formation, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035298 P regulation of Malpighian tubule size
GO:0035317 P imaginal disc-derived wing hair organization
GO:0042060 P wound healing
GO:0042249 P establishment of planar polarity of embryonic epithelium
GO:0044291 C cell-cell contact zone
GO:0045179 C apical cortex
GO:0045184 P establishment of protein localization
GO:0045199 P maintenance of epithelial cell apical/basal polarity
GO:0046663 P dorsal closure, leading edge cell differentiation
GO:0046664 P dorsal closure, amnioserosa morphology change
GO:0048812 P neuron projection morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0050770 P regulation of axonogenesis
GO:0050896 P response to stimulus
GO:0051017 P actin filament bundle assembly
GO:0051489 P regulation of filopodium assembly
GO:0051493 P regulation of cytoskeleton organization
GO:0070252 P actin-mediated cell contraction
GO:0070451 C cell hair
GO:0070593 P dendrite self-avoidance
GO:0071896 P protein localization to adherens junction
GO:0071902 P positive regulation of protein serine/threonine kinase activity
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090251 P protein localization involved in establishment of planar polarity
GO:0090254 P cell elongation involved in imaginal disc-derived wing morphogenesis
GO:0090303 P positive regulation of wound healing
GO:1901739 P regulation of myoblast fusion
GO:1903475 P mitotic actomyosin contractile ring assembly
GO:1904059 P regulation of locomotor rhythm
4017 O_BomoSK13616_complete:A_BomoSK_comp13320_c0_seq1
143bp
 hypothetical_protein_[Meteorus_pulchricornis]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
4018 O_BomoSK13617_complete:A_BomoSK_comp13320_c0_seq1
103bp
4019 O_BomoSK13618_complete:A_BomoSK_comp13320_c0_seq1
101bp
4020 O_BomoSK13619_5prime_partial:A_BomoSK_comp13320_c0_seq2
867bp
 PREDICTED:_polynucleotide_5'-hydroxyl-kinase_NOL9_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000448 P cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0051731 F polynucleotide 5'-hydroxyl-kinase activity
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