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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
361 O_BomoSK10325_3prime_partial:A_BomoSK_comp12146_c0_seq1
475bp
 PREDICTED:_serine/threonine-protein_kinase_26_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000278 P mitotic cell cycle
GO:0003674 F molecular_function
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0008631 P intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0030336 P negative regulation of cell migration
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048680 P positive regulation of axon regeneration
362 O_BomoSK10326_3prime_partial:A_BomoSK_comp12148_c0_seq1
427bp
 PREDICTED:_serine--tRNA_ligase,_mitochondrial_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004828 F serine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006434 P seryl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0044822 F RNA binding
GO:0097056 P selenocysteinyl-tRNA(Sec) biosynthetic process
363 O_BomoSK10327_3prime_partial:A_BomoSK_comp12148_c0_seq2
204bp
 Seryl-tRNA_synthetase_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004828 F serine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006434 P seryl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0044822 F RNA binding
GO:0097056 P selenocysteinyl-tRNA(Sec) biosynthetic process
364 O_BomoSK10328_complete:A_BomoSK_comp12149_c0_seq1
283bp
 PREDICTED:_ATPase_family_AAA_domain-containing_protein_3-B_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042645 C mitochondrial nucleoid
365 O_BomoSK10329_complete:A_BomoSK_comp12149_c0_seq2
632bp
 putative_ATPase_family_AAA_domain-containing_protein_3_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042645 C mitochondrial nucleoid
366 O_BomoSK1032_complete:A_BomoSK_comp3824_c0_seq1
487bp
 PREDICTED:_ER_degradation-enhancing_alpha-mannosidase-like_protein_2_isoform_X2_[Bombyx_mori]
GO:0001948 F protein binding
GO:0004559 F alpha-mannosidase activity
GO:0004571 F mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509 F calcium ion binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006491 P N-glycan processing
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0036509 P trimming of terminal mannose on B branch
GO:0044322 C endoplasmic reticulum quality control compartment
GO:0097466 P ubiquitin-dependent glycoprotein ERAD pathway
GO:1904154 P positive regulation of retrograde protein transport, ER to cytosol
GO:1904380 P endoplasmic reticulum mannose trimming
GO:1904382 P mannose trimming involved in glycoprotein ERAD pathway
367 O_BomoSK10330_complete:A_BomoSK_comp12150_c0_seq1
187bp
 PREDICTED:_quinolone_resistance_protein_NorA-like_[Papilio_polytes]
GO:0005215 F transporter activity
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
368 O_BomoSK10331_complete:A_BomoSK_comp12150_c0_seq1
172bp
 PREDICTED:_tetracycline_resistance_protein,_class_D-like_[Amyelois_transitella]
GO:0005215 F transporter activity
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
369 O_BomoSK10332_complete:A_BomoSK_comp12150_c0_seq2
411bp
 PREDICTED:_tetracycline_resistance_protein,_class_D-like_[Amyelois_transitella]
GO:0005215 F transporter activity
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
370 O_BomoSK10333_5prime_partial:A_BomoSK_comp12151_c0_seq1
115bp
 PREDICTED:_F-box/WD_repeat-containing_protein_4_[Plutella_xylostella]
GO:0002053 P positive regulation of mesenchymal cell proliferation
GO:0007275 P multicellular organism development
GO:0016055 P Wnt signaling pathway
GO:0042733 P embryonic digit morphogenesis
GO:0051216 P cartilage development
GO:0060173 P limb development
371 O_BomoSK10334_complete:A_BomoSK_comp12151_c0_seq2
422bp
 PREDICTED:_F-box/WD_repeat-containing_protein_4-like_isoform_X1_[Bombyx_mori]
GO:0002053 P positive regulation of mesenchymal cell proliferation
GO:0007275 P multicellular organism development
GO:0016055 P Wnt signaling pathway
GO:0042733 P embryonic digit morphogenesis
GO:0051216 P cartilage development
GO:0060173 P limb development
372 O_BomoSK10335_complete:A_BomoSK_comp12151_c0_seq2
101bp
 immunoglobulin_I-set_domain_protein,_partial_[Oesophagostomum_dentatum]
373 O_BomoSK10336_internal:A_BomoSK_comp12152_c0_seq1
110bp
 PREDICTED:_kinesin-like_protein_a_isoform_X2_[Bombyx_mori]
374 O_BomoSK10337_3prime_partial:A_BomoSK_comp12152_c0_seq2
103bp
 PREDICTED:_kinesin-like_protein_a_isoform_X2_[Bombyx_mori]
375 O_BomoSK10338_complete:A_BomoSK_comp12152_c0_seq3
105bp
 PREDICTED:_olfactory_receptor_5V1-like_[Sarcophilus_harrisii]
376 O_BomoSK10339_complete:A_BomoSK_comp12152_c0_seq4
105bp
 PREDICTED:_olfactory_receptor_5V1-like_[Sarcophilus_harrisii]
377 O_BomoSK1033_complete:A_BomoSK_comp3824_c0_seq2
725bp
 PREDICTED:_ER_degradation-enhancing_alpha-mannosidase-like_protein_2_isoform_X2_[Bombyx_mori]
GO:0001948 F protein binding
GO:0004559 F alpha-mannosidase activity
GO:0004571 F mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
GO:0005509 F calcium ion binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0006491 P N-glycan processing
GO:0006986 P response to unfolded protein
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0036509 P trimming of terminal mannose on B branch
GO:0044322 C endoplasmic reticulum quality control compartment
GO:0097466 P ubiquitin-dependent glycoprotein ERAD pathway
GO:1904154 P positive regulation of retrograde protein transport, ER to cytosol
GO:1904380 P endoplasmic reticulum mannose trimming
GO:1904382 P mannose trimming involved in glycoprotein ERAD pathway
378 O_BomoSK10340_5prime_partial:A_BomoSK_comp12155_c0_seq1
143bp
 cytochrome_b5_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
379 O_BomoSK10341_3prime_partial:A_BomoSK_comp12155_c0_seq1
128bp
380 O_BomoSK10342_complete:A_BomoSK_comp12157_c0_seq1
383bp
 putative_alternative_splicing_type_3_and_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
381 O_BomoSK10343_complete:A_BomoSK_comp12157_c0_seq1
142bp
382 O_BomoSK10344_complete:A_BomoSK_comp12157_c0_seq2
383bp
 putative_alternative_splicing_type_3_and_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
383 O_BomoSK10345_complete:A_BomoSK_comp12157_c0_seq2
211bp
 acyl-CoA_dehydrogenase_[Burkholderia_nodosa]
384 O_BomoSK10346_complete:A_BomoSK_comp12157_c0_seq2
142bp
385 O_BomoSK10347_complete:A_BomoSK_comp12158_c0_seq1
621bp
 PREDICTED:_poly(A)_polymerase_type_3_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031123 P RNA 3'-end processing
GO:0043631 P RNA polyadenylation
GO:0046872 F metal ion binding
386 O_BomoSK10348_complete:A_BomoSK_comp12158_c0_seq2
621bp
 PREDICTED:_poly(A)_polymerase_type_3_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031123 P RNA 3'-end processing
GO:0043631 P RNA polyadenylation
GO:0046872 F metal ion binding
387 O_BomoSK10349_complete:A_BomoSK_comp12163_c0_seq1
136bp
 PREDICTED:_peptidyl-prolyl_cis-trans_isomerase_isoform_X1_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003677 F DNA binding
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
388 O_BomoSK1034_complete:A_BomoSK_comp3826_c0_seq1
179bp
 PREDICTED:_zinc_finger_CCCH_domain-containing_protein_11A-like_[Bombyx_mori]
GO:0000346 C transcription export complex
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051028 P mRNA transport
389 O_BomoSK10350_complete:A_BomoSK_comp12163_c0_seq2
136bp
 PREDICTED:_peptidyl-prolyl_cis-trans_isomerase_isoform_X1_[Bombyx_mori]
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0003677 F DNA binding
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
390 O_BomoSK10351_complete:A_BomoSK_comp12163_c0_seq2
112bp
 PREDICTED:_sarcolemmal_membrane-associated_protein_isoform_X1_[Esox_lucius]
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