Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
3421	O_BomoSK1307_5prime_partial:A_BomoSK_comp4080_c0_seq1 103bp	Bomo_Chr15	DNA-binding_transcriptional_regulator_[Actinomyces_naeslundii]
3422	O_BomoSK13080_3prime_partial:A_BomoSK_comp13190_c0_seq1 678bp	Bomo_Scaf535	PREDICTED:_verprolin_isoform_X3_[Bombyx_mori]	GO:0001105 F transcription coactivator activity GO:0001701 P in utero embryonic development GO:0001764 P neuron migration GO:0001889 P liver development GO:0003007 P heart morphogenesis GO:0003700 F DNA-binding transcription factor activity GO:0003713 F transcription coactivator activity GO:0003779 F actin binding GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0007275 P multicellular organism development GO:0007507 P heart development GO:0007517 P muscle organ development GO:0010467 P gene expression GO:0010468 P regulation of gene expression GO:0030036 P actin cytoskeleton organization GO:0030154 P cell differentiation GO:0030900 P forebrain development GO:0031175 P neuron projection development GO:0045844 P positive regulation of striated muscle tissue development GO:0045893 P positive regulation of transcription, DNA-templated GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0048514 P blood vessel morphogenesis GO:0048568 P embryonic organ development GO:0048738 P cardiac muscle tissue development GO:0051145 P smooth muscle cell differentiation
3423	O_BomoSK13081_complete:A_BomoSK_comp13190_c0_seq1 146bp	Bomo_Scaf535
3424	O_BomoSK13082_5prime_partial:A_BomoSK_comp13190_c0_seq1 138bp	Bomo_Scaf535	PREDICTED:_verprolin_isoform_X2_[Bombyx_mori]	GO:0001105 F transcription coactivator activity GO:0003713 F transcription coactivator activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0007275 P multicellular organism development GO:0007517 P muscle organ development GO:0030154 P cell differentiation GO:0045844 P positive regulation of striated muscle tissue development GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0051145 P smooth muscle cell differentiation
3425	O_BomoSK13083_complete:A_BomoSK_comp13190_c0_seq1 138bp	Bomo_Scaf535	hypothetical_protein_AQI95_16150_[Streptomyces_yokosukanensis]
3426	O_BomoSK13084_complete:A_BomoSK_comp13190_c0_seq1 112bp	Bomo_Scaf535
3427	O_BomoSK13085_complete:A_BomoSK_comp13190_c0_seq1 111bp	Bomo_Scaf535
3428	O_BomoSK13086_3prime_partial:A_BomoSK_comp13191_c0_seq1 767bp	Bomo_Chr25	PREDICTED:_serine/threonine-protein_phosphatase_4_regulatory_subunit_3_[Bombyx_mori]	GO:0000775 C chromosome, centromeric region GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006909 P phagocytosis GO:0007391 P dorsal closure GO:0007405 P neuroblast proliferation GO:0008105 P protein localization GO:0016020 C membrane GO:0016601 P Rac protein signal transduction GO:0030289 C protein phosphatase 4 complex GO:0043505 C CENP-A containing nucleosome GO:0055059 P asymmetric neuroblast division
3429	O_BomoSK13087_3prime_partial:A_BomoSK_comp13191_c0_seq2 776bp	Bomo_Chr25	PREDICTED:_serine/threonine-protein_phosphatase_4_regulatory_subunit_3_[Bombyx_mori]	GO:0000775 C chromosome, centromeric region GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006909 P phagocytosis GO:0007391 P dorsal closure GO:0007405 P neuroblast proliferation GO:0008105 P protein localization GO:0016020 C membrane GO:0016601 P Rac protein signal transduction GO:0030289 C protein phosphatase 4 complex GO:0043505 C CENP-A containing nucleosome GO:0055059 P asymmetric neuroblast division
3430	O_BomoSK13088_3prime_partial:A_BomoSK_comp13191_c0_seq3 776bp	Bomo_Chr25	PREDICTED:_serine/threonine-protein_phosphatase_4_regulatory_subunit_3_[Bombyx_mori]	GO:0000775 C chromosome, centromeric region GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006909 P phagocytosis GO:0007391 P dorsal closure GO:0007405 P neuroblast proliferation GO:0008105 P protein localization GO:0016020 C membrane GO:0016601 P Rac protein signal transduction GO:0030289 C protein phosphatase 4 complex GO:0043505 C CENP-A containing nucleosome GO:0055059 P asymmetric neuroblast division
3431	O_BomoSK13089_3prime_partial:A_BomoSK_comp13191_c0_seq4 767bp	Bomo_Chr25	PREDICTED:_serine/threonine-protein_phosphatase_4_regulatory_subunit_3_[Bombyx_mori]	GO:0000775 C chromosome, centromeric region GO:0005515 F protein binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006281 P DNA repair GO:0006909 P phagocytosis GO:0007391 P dorsal closure GO:0007405 P neuroblast proliferation GO:0008105 P protein localization GO:0016020 C membrane GO:0016601 P Rac protein signal transduction GO:0030289 C protein phosphatase 4 complex GO:0043505 C CENP-A containing nucleosome GO:0055059 P asymmetric neuroblast division
3432	O_BomoSK1308_3prime_partial:A_BomoSK_comp4080_c0_seq2 148bp	Bomo_Chr15	PREDICTED:_receptor-mediated_endocytosis_protein_6_homolog_[Bombyx_mori]
3433	O_BomoSK13090_complete:A_BomoSK_comp13192_c0_seq1 1001bp	Bomo_Chr22	parp_[Bombyx_mori]	GO:0003677 F DNA binding GO:0003950 F NAD+ ADP-ribosyltransferase activity GO:0005634 C nucleus GO:0006471 P protein ADP-ribosylation GO:0008270 F zinc ion binding GO:0016740 F transferase activity GO:0016757 F glycosyltransferase activity GO:0046872 F metal ion binding GO:0051287 F NAD binding
3434	O_BomoSK13091_complete:A_BomoSK_comp13192_c0_seq1 113bp	Bomo_Chr22	methylmalonyl-CoA_mutase_subunit_alpha_[Actinoplanes_friuliensis]
3435	O_BomoSK13092_complete:A_BomoSK_comp13192_c0_seq2 241bp	Bomo_Chr22	parp_[Bombyx_mori]	GO:0000122 P negative regulation of transcription by RNA polymerase II GO:0000715 P nucleotide-excision repair, DNA damage recognition GO:0000717 P nucleotide-excision repair, DNA duplex unwinding GO:0000724 P double-strand break repair via homologous recombination GO:0000784 C chromosome, telomeric region GO:0003677 F DNA binding GO:0003910 F DNA ligase (ATP) activity GO:0003950 F NAD+ ADP-ribosyltransferase activity GO:0005515 F protein binding GO:0005634 C nucleus GO:0005635 C nuclear envelope GO:0005654 C nucleoplasm GO:0005667 C transcription regulator complex GO:0005730 C nucleolus GO:0005739 C mitochondrion GO:0006273 P lagging strand elongation GO:0006281 P DNA repair GO:0006293 P nucleotide-excision repair, preincision complex stabilization GO:0006294 P nucleotide-excision repair, preincision complex assembly GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion GO:0006302 P double-strand break repair GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006366 P transcription by RNA polymerase II GO:0006471 P protein ADP-ribosylation GO:0006974 P cellular response to DNA damage stimulus GO:0007005 P mitochondrion organization GO:0007179 P transforming growth factor beta receptor signaling pathway GO:0008134 F transcription factor binding GO:0008270 F zinc ion binding GO:0010613 P positive regulation of cardiac muscle hypertrophy GO:0016020 C membrane GO:0016540 P protein autoprocessing GO:0016740 F transferase activity GO:0016757 F glycosyltransferase activity GO:0016925 P protein sumoylation GO:0019899 F enzyme binding GO:0019901 F protein kinase binding GO:0023019 P signal transduction involved in regulation of gene expression GO:0030225 P macrophage differentiation GO:0032042 P mitochondrial DNA metabolic process GO:0032869 P cellular response to insulin stimulus GO:0033683 P nucleotide-excision repair, DNA incision GO:0034599 P cellular response to oxidative stress GO:0036211 P protein modification process GO:0042769 P obsolete DNA damage response, detection of DNA damage GO:0042802 F identical protein binding GO:0042826 F histone deacetylase binding GO:0043234 C protein-containing complex GO:0043504 P mitochondrial DNA repair GO:0044822 F RNA binding GO:0045944 P positive regulation of transcription by RNA polymerase II GO:0046872 F metal ion binding GO:0047485 F protein N-terminus binding GO:0051103 P DNA ligation involved in DNA repair GO:0051287 F NAD binding GO:0060391 P positive regulation of SMAD protein signal transduction GO:0070212 P protein poly-ADP-ribosylation GO:0070412 F R-SMAD binding GO:0070911 P global genome nucleotide-excision repair GO:1903827 P regulation of protein localization GO:1904357 P negative regulation of telomere maintenance via telomere lengthening GO:2000679 P positive regulation of transcription regulatory region DNA binding
3436	O_BomoSK13093_complete:A_BomoSK_comp13193_c0_seq1 657bp	Bomo_Chr23	alpha-esterase_47_isoform_l_[Bombyx_mori]	GO:0004104 F cholinesterase activity GO:0008152 P metabolic process GO:0016787 F hydrolase activity GO:0052689 F carboxylic ester hydrolase activity
3437	O_BomoSK13094_complete:A_BomoSK_comp13193_c0_seq1 114bp	Bomo_Chr23	phenylalanine--tRNA_ligase_subunit_alpha_[Pontibacter_korlensis]
3438	O_BomoSK13095_complete:A_BomoSK_comp13193_c0_seq2 757bp	Bomo_Chr23	carboxyl/cholinesterase_5BL_[Bombyx_mori]	GO:0004453 F juvenile-hormone esterase activity GO:0008152 P metabolic process GO:0016787 F hydrolase activity GO:0052689 F carboxylic ester hydrolase activity
3439	O_BomoSK13096_complete:A_BomoSK_comp13193_c0_seq2 202bp	Bomo_Chr23	AI-2E_family_transporter_[[Clostridium]_methoxybenzovorans]
3440	O_BomoSK13097_complete:A_BomoSK_comp13193_c0_seq3 106bp	Bomo_Chr23	PREDICTED:_WNT1-inducible-signaling_pathway_protein_2_[Diuraphis_noxia]
3441	O_BomoSK13098_complete:A_BomoSK_comp13193_c0_seq4 757bp	Bomo_Chr23	carboxyl/cholinesterase_5BL_[Bombyx_mori]	GO:0004453 F juvenile-hormone esterase activity GO:0008152 P metabolic process GO:0016787 F hydrolase activity GO:0052689 F carboxylic ester hydrolase activity
3442	O_BomoSK13099_complete:A_BomoSK_comp13193_c0_seq4 202bp	Bomo_Chr23	AI-2E_family_transporter_[[Clostridium]_methoxybenzovorans]
3443	O_BomoSK1309_3prime_partial:A_BomoSK_comp4080_c0_seq2 148bp	Bomo_Chr15	PREDICTED:_receptor-mediated_endocytosis_protein_6_homolog_[Bombyx_mori]
3444	O_BomoSK130_internal:A_BomoSK_comp418_c1_seq1 183bp	Bomo_Chr10	PREDICTED:_uncharacterized_protein_LOC101744598_isoform_X3_[Bombyx_mori]
3445	O_BomoSK13100_complete:A_BomoSK_comp13193_c0_seq5 626bp	Bomo_Chr23	fatty-acyl_CoA_reductase_2_[Ostrinia_nubilalis]	GO:0005777 C peroxisome GO:0005778 C peroxisomal membrane GO:0006629 P lipid metabolic process GO:0008611 P ether lipid biosynthetic process GO:0010025 P wax biosynthetic process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016491 F oxidoreductase activity GO:0016620 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0035336 P long-chain fatty-acyl-CoA metabolic process GO:0050062 F long-chain-fatty-acyl-CoA reductase activity GO:0055114 P obsolete oxidation-reduction process GO:0080019 F fatty-acyl-CoA reductase (alcohol-forming) activity
3446	O_BomoSK13101_complete:A_BomoSK_comp13193_c0_seq5 116bp	Bomo_Chr23	uncharacterized_protein_Dmoj_GI21795_[Drosophila_mojavensis]
3447	O_BomoSK13102_complete:A_BomoSK_comp13193_c0_seq5 110bp	Bomo_Chr23	hypothetical_protein_[Alteromonadaceae_bacterium_Bs12]
3448	O_BomoSK13103_complete:A_BomoSK_comp13193_c0_seq5 107bp	Bomo_Chr23	cupin_superfamily_protein_[Streptomyces_sp._B9173]
3449	O_BomoSK13104_complete:A_BomoSK_comp13193_c0_seq6 106bp	Bomo_Chr23	PREDICTED:_WNT1-inducible-signaling_pathway_protein_2_[Diuraphis_noxia]
3450	O_BomoSK13105_5prime_partial:A_BomoSK_comp13194_c0_seq1 522bp	Bomo_Chr24	PREDICTED:_putative_U5_small_nuclear_ribonucleoprotein_200_kDa_helicase_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0000398 P mRNA splicing, via spliceosome GO:0003676 F nucleic acid binding GO:0003724 F RNA helicase activity GO:0004004 F RNA helicase activity GO:0004386 F helicase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005681 C spliceosomal complex GO:0006397 P mRNA processing GO:0007067 P mitotic cell cycle GO:0007419 P ventral cord development GO:0008380 P RNA splicing GO:0016787 F hydrolase activity GO:0030532 C small nuclear ribonucleoprotein complex GO:0071011 C precatalytic spliceosome GO:0071013 C catalytic step 2 spliceosome