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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3361 O_BomoSK13025_internal:A_BomoSK_comp13174_c1_seq1
187bp
 Retrovirus-related_Pol_polyprotein_from_transposon_412,_partial_[Camponotus_floridanus]
3362 O_BomoSK13026_internal:A_BomoSK_comp13174_c2_seq1
112bp
 Retrovirus-related_Pol_polyprotein_from_transposon_412-like_Protein_[Tribolium_castaneum]
3363 O_BomoSK13027_internal:A_BomoSK_comp13174_c3_seq1
361bp
 PREDICTED:_G_patch_domain-containing_protein_1_homolog_[Papilio_polytes]
GO:0003676 F nucleic acid binding
GO:0006397 P mRNA processing
3364 O_BomoSK13028_complete:A_BomoSK_comp13175_c0_seq2
1016bp
 DEAD_box_RNA_helicase_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010501 P RNA secondary structure unwinding
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0016787 F hydrolase activity
3365 O_BomoSK13029_complete:A_BomoSK_comp13175_c0_seq2
148bp
3366 O_BomoSK1302_complete:A_BomoSK_comp4078_c0_seq1
320bp
 PREDICTED:_epidermal_retinal_dehydrogenase_isoform_X1_[Bombyx_mori]
GO:0004745 F NAD-retinol dehydrogenase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0042572 P retinol metabolic process
GO:0042574 P retinal metabolic process
GO:0043616 P keratinocyte proliferation
GO:0050908 P detection of light stimulus involved in visual perception
GO:0055114 P obsolete oxidation-reduction process
3367 O_BomoSK13030_complete:A_BomoSK_comp13175_c0_seq2
127bp
3368 O_BomoSK13031_complete:A_BomoSK_comp13175_c0_seq2
124bp
 hypothetical_protein_NC99_03580_[Sunxiuqinia_dokdonensis]
3369 O_BomoSK13032_complete:A_BomoSK_comp13176_c0_seq2
198bp
 PREDICTED:_uncharacterized_protein_LOC106106714_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0005739 C mitochondrion
GO:0005761 C mitochondrial ribosome
GO:0005840 C ribosome
GO:0008150 P biological_process
GO:0030529 C ribonucleoprotein complex
3370 O_BomoSK13033_complete:A_BomoSK_comp13177_c0_seq1
330bp
 PREDICTED:_multivesicular_body_subunit_12A_[Papilio_xuthus]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0031902 C late endosome membrane
3371 O_BomoSK13034_complete:A_BomoSK_comp13177_c0_seq2
330bp
 PREDICTED:_multivesicular_body_subunit_12A_[Papilio_xuthus]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017124 F SH3 domain binding
GO:0031902 C late endosome membrane
3372 O_BomoSK13035_complete:A_BomoSK_comp13178_c0_seq1
534bp
 PREDICTED:_probable_sodium-coupled_neutral_amino_acid_transporter_6_[Amyelois_transitella]
GO:0006810 P transport
GO:0006865 P amino acid transport
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
3373 O_BomoSK13036_complete:A_BomoSK_comp13178_c0_seq1
195bp
 hypothetical_protein_[Roseiflexus_sp._RS-1]
3374 O_BomoSK13037_complete:A_BomoSK_comp13178_c0_seq1
144bp
 membrane_protein_[Propionibacterium_jensenii]
3375 O_BomoSK13038_complete:A_BomoSK_comp13179_c0_seq1
566bp
 PREDICTED:_asparagine_synthetase_domain-containing_protein_CG17486_isoform_X3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004066 F asparagine synthase (glutamine-hydrolyzing) activity
GO:0005575 C cellular_component
GO:0005829 C cytosol
GO:0006529 P asparagine biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0008150 P biological_process
GO:0008652 P cellular amino acid biosynthetic process
GO:0042803 F protein homodimerization activity
3376 O_BomoSK13039_complete:A_BomoSK_comp13179_c0_seq1
358bp
 PREDICTED:_arf-GAP_domain_and_FG_repeat-containing_protein_1_isoform_X1_[Bombyx_mori]
GO:0001675 P acrosome assembly
GO:0003677 F DNA binding
GO:0005096 F GTPase activator activity
GO:0005634 C nucleus
GO:0006810 P transport
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0007289 P spermatid nucleus differentiation
GO:0016023 C cytoplasmic vesicle
GO:0030154 P cell differentiation
GO:0031410 C cytoplasmic vesicle
GO:0042995 C cell projection
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0043547 P positive regulation of GTPase activity
GO:0045109 P intermediate filament organization
GO:0046872 F metal ion binding
3377 O_BomoSK1303_complete:A_BomoSK_comp4078_c0_seq2
320bp
 PREDICTED:_epidermal_retinal_dehydrogenase_isoform_X1_[Bombyx_mori]
GO:0004745 F NAD-retinol dehydrogenase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016491 F oxidoreductase activity
GO:0042572 P retinol metabolic process
GO:0042574 P retinal metabolic process
GO:0043616 P keratinocyte proliferation
GO:0050908 P detection of light stimulus involved in visual perception
GO:0055114 P obsolete oxidation-reduction process
3378 O_BomoSK13040_complete:A_BomoSK_comp13179_c0_seq2
570bp
 PREDICTED:_asparagine_synthetase_domain-containing_protein_CG17486_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004066 F asparagine synthase (glutamine-hydrolyzing) activity
GO:0005575 C cellular_component
GO:0005829 C cytosol
GO:0006529 P asparagine biosynthetic process
GO:0006541 P glutamine metabolic process
GO:0008150 P biological_process
GO:0008652 P cellular amino acid biosynthetic process
GO:0042803 F protein homodimerization activity
3379 O_BomoSK13041_complete:A_BomoSK_comp13180_c0_seq1
160bp
 PREDICTED:_transcription_factor_XE1.1_isoform_X1_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001012 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007422 P peripheral nervous system development
GO:0007423 P sensory organ development
GO:0007530 P sex determination
GO:0007541 P sex determination, primary response to X:A ratio
GO:0008134 F transcription factor binding
GO:0008407 P chaeta morphogenesis
GO:0016330 P second mitotic wave involved in compound eye morphogenesis
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0030707 P ovarian follicle cell development
GO:0035019 P somatic stem cell population maintenance
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045464 P R8 cell fate specification
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048477 P oogenesis
GO:0048663 P neuron fate commitment
GO:0061101 P neuroendocrine cell differentiation
GO:0061382 P Malpighian tubule tip cell differentiation
3380 O_BomoSK13042_complete:A_BomoSK_comp13180_c0_seq1
135bp
 RHS_repeat-associated_core_domain-containing_protein_[Terrimonas_ferruginea]
3381 O_BomoSK13043_5prime_partial:A_BomoSK_comp13180_c0_seq2
410bp
 hypothetical_protein_KGM_13328_[Danaus_plexippus]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001012 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007422 P peripheral nervous system development
GO:0007423 P sensory organ development
GO:0007530 P sex determination
GO:0007541 P sex determination, primary response to X:A ratio
GO:0008134 F transcription factor binding
GO:0008407 P chaeta morphogenesis
GO:0016330 P second mitotic wave involved in compound eye morphogenesis
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0030707 P ovarian follicle cell development
GO:0035019 P somatic stem cell population maintenance
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045464 P R8 cell fate specification
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048477 P oogenesis
GO:0048663 P neuron fate commitment
GO:0061101 P neuroendocrine cell differentiation
GO:0061382 P Malpighian tubule tip cell differentiation
3382 O_BomoSK13044_complete:A_BomoSK_comp13180_c0_seq2
226bp
3383 O_BomoSK13045_5prime_partial:A_BomoSK_comp13180_c0_seq2
128bp
3384 O_BomoSK13046_5prime_partial:A_BomoSK_comp13180_c0_seq2
126bp
 DNA_repair_protein_RecN_[Actinomyces_sp._oral_taxon_175]
3385 O_BomoSK13047_complete:A_BomoSK_comp13180_c0_seq3
143bp
 PREDICTED:_transcription_factor_XE1.1_isoform_X1_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001012 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007422 P peripheral nervous system development
GO:0007423 P sensory organ development
GO:0007530 P sex determination
GO:0007541 P sex determination, primary response to X:A ratio
GO:0008134 F transcription factor binding
GO:0008407 P chaeta morphogenesis
GO:0016330 P second mitotic wave involved in compound eye morphogenesis
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0030707 P ovarian follicle cell development
GO:0035019 P somatic stem cell population maintenance
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045464 P R8 cell fate specification
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048477 P oogenesis
GO:0048663 P neuron fate commitment
GO:0061101 P neuroendocrine cell differentiation
GO:0061382 P Malpighian tubule tip cell differentiation
3386 O_BomoSK13048_5prime_partial:A_BomoSK_comp13180_c0_seq4
381bp
 PREDICTED:_protein_daughterless_isoform_X4_[Papilio_xuthus]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001012 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007422 P peripheral nervous system development
GO:0007423 P sensory organ development
GO:0007530 P sex determination
GO:0007541 P sex determination, primary response to X:A ratio
GO:0008134 F transcription factor binding
GO:0008407 P chaeta morphogenesis
GO:0016330 P second mitotic wave involved in compound eye morphogenesis
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0030707 P ovarian follicle cell development
GO:0035019 P somatic stem cell population maintenance
GO:0042803 F protein homodimerization activity
GO:0043565 F sequence-specific DNA binding
GO:0045464 P R8 cell fate specification
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048477 P oogenesis
GO:0048663 P neuron fate commitment
GO:0061101 P neuroendocrine cell differentiation
GO:0061382 P Malpighian tubule tip cell differentiation
3387 O_BomoSK13049_complete:A_BomoSK_comp13180_c0_seq4
197bp
 Uncharacterised_protein_[Achromobacter_sp._2789STDY5608623]
3388 O_BomoSK1304_complete:A_BomoSK_comp4079_c0_seq1
198bp
 cell_death_activator_CIDE-B_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0034389 P lipid droplet organization
GO:0042981 P regulation of apoptotic process
GO:0097194 P execution phase of apoptosis
3389 O_BomoSK13050_5prime_partial:A_BomoSK_comp13180_c0_seq4
128bp
3390 O_BomoSK13051_5prime_partial:A_BomoSK_comp13180_c0_seq4
126bp
 DNA_repair_protein_RecN_[Actinomyces_sp._oral_taxon_175]
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