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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
31 O_BomoSK10028_complete:A_BomoSK_comp12014_c1_seq1
394bp
 PREDICTED:_hsc70-interacting_protein-like_[Papilio_machaon]
GO:0005737 C cytoplasm
32 O_BomoSK10029_complete:A_BomoSK_comp12014_c1_seq2
394bp
 PREDICTED:_hsc70-interacting_protein-like_[Papilio_machaon]
GO:0005737 C cytoplasm
33 O_BomoSK1002_5prime_partial:A_BomoSK_comp3785_c0_seq1
110bp
34 O_BomoSK10030_complete:A_BomoSK_comp12015_c1_seq1
958bp
 PREDICTED:_uncharacterized_protein_LOC101746598_[Bombyx_mori]
35 O_BomoSK10031_complete:A_BomoSK_comp12015_c1_seq1
174bp
 helicase_[Bradyrhizobium_sp._CCBAU_43298]
36 O_BomoSK10032_complete:A_BomoSK_comp12015_c1_seq2
772bp
 PREDICTED:_uncharacterized_protein_LOC101746598_[Bombyx_mori]
37 O_BomoSK10033_complete:A_BomoSK_comp12015_c1_seq2
174bp
 helicase_[Bradyrhizobium_sp._CCBAU_43298]
38 O_BomoSK10034_complete:A_BomoSK_comp12016_c0_seq1
968bp
 alanine--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004813 F alanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006419 P alanyl-tRNA aminoacylation
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0046872 F metal ion binding
39 O_BomoSK10035_5prime_partial:A_BomoSK_comp12017_c0_seq1
154bp
 PREDICTED:_CHH-like_protein_isoform_X1_[Bombyx_mori]
GO:0005179 F hormone activity
GO:0005184 F neuropeptide hormone activity
GO:0005576 C extracellular region
GO:0007218 P neuropeptide signaling pathway
40 O_BomoSK10036_5prime_partial:A_BomoSK_comp12017_c0_seq2
154bp
 PREDICTED:_CHH-like_protein_isoform_X1_[Bombyx_mori]
GO:0005179 F hormone activity
GO:0005184 F neuropeptide hormone activity
GO:0005576 C extracellular region
GO:0007218 P neuropeptide signaling pathway
41 O_BomoSK10037_complete:A_BomoSK_comp12018_c0_seq1
373bp
 putative_neuropeptide_precursor_protein_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
42 O_BomoSK10038_3prime_partial:A_BomoSK_comp12019_c0_seq1
805bp
 PREDICTED:_pyruvate_carboxylase,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003824 F catalytic activity
GO:0004075 F biotin carboxylase activity
GO:0004736 F pyruvate carboxylase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006090 P pyruvate metabolic process
GO:0006094 P gluconeogenesis
GO:0006107 P oxaloacetate metabolic process
GO:0006629 P lipid metabolic process
GO:0006768 P biotin metabolic process
GO:0008152 P metabolic process
GO:0009374 F biotin binding
GO:0010629 P negative regulation of gene expression
GO:0016874 F ligase activity
GO:0019074 P viral RNA genome packaging
GO:0031406 F carboxylic acid binding
GO:0044791 P obsolete positive regulation by host of viral release from host cell
GO:0044794 P positive regulation by host of viral process
GO:0046872 F metal ion binding
43 O_BomoSK10039_3prime_partial:A_BomoSK_comp12019_c0_seq2
810bp
 PREDICTED:_pyruvate_carboxylase,_mitochondrial_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003824 F catalytic activity
GO:0004075 F biotin carboxylase activity
GO:0004736 F pyruvate carboxylase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005829 C cytosol
GO:0006090 P pyruvate metabolic process
GO:0006094 P gluconeogenesis
GO:0006107 P oxaloacetate metabolic process
GO:0006629 P lipid metabolic process
GO:0006768 P biotin metabolic process
GO:0008152 P metabolic process
GO:0009374 F biotin binding
GO:0010629 P negative regulation of gene expression
GO:0016874 F ligase activity
GO:0019074 P viral RNA genome packaging
GO:0031406 F carboxylic acid binding
GO:0044791 P obsolete positive regulation by host of viral release from host cell
GO:0044794 P positive regulation by host of viral process
GO:0046872 F metal ion binding
44 O_BomoSK1003_internal:A_BomoSK_comp3786_c0_seq1
291bp
 PREDICTED:_E3_ubiquitin-protein_ligase_HECTD1_isoform_X2_[Bombyx_mori]
GO:0001779 P natural killer cell differentiation
GO:0001843 P neural tube closure
GO:0001892 P embryonic placenta development
GO:0003170 P heart valve development
GO:0003281 P ventricular septum development
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0035904 P aorta development
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0060707 P trophoblast giant cell differentiation
GO:0060708 P spongiotrophoblast differentiation
GO:0061630 F ubiquitin protein ligase activity
GO:0070534 P protein K63-linked ubiquitination
GO:1903077 P negative regulation of protein localization to plasma membrane
45 O_BomoSK10040_3prime_partial:A_BomoSK_comp12020_c0_seq1
159bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_huntingtin-interacting_protein_1_[Bombyx_mori]
46 O_BomoSK10041_3prime_partial:A_BomoSK_comp12020_c0_seq2
774bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_huntingtin-interacting_protein_1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0030154 P cell differentiation
GO:0030276 F clathrin binding
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:0042981 P regulation of apoptotic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0097190 P apoptotic signaling pathway
47 O_BomoSK10042_complete:A_BomoSK_comp12020_c0_seq2
143bp
48 O_BomoSK10043_complete:A_BomoSK_comp12022_c0_seq1
525bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_tyrosine--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004831 F tyrosine-tRNA ligase activity
GO:0004832 F valine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006437 P tyrosyl-tRNA aminoacylation
GO:0006438 P valyl-tRNA aminoacylation
GO:0016874 F ligase activity
49 O_BomoSK10044_complete:A_BomoSK_comp12022_c0_seq1
141bp
 hypothetical_protein_CaO19.9958_[Candida_albicans_SC5314]
50 O_BomoSK10045_complete:A_BomoSK_comp12022_c0_seq2
525bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_tyrosine--tRNA_ligase,_cytoplasmic_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004831 F tyrosine-tRNA ligase activity
GO:0004832 F valine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006437 P tyrosyl-tRNA aminoacylation
GO:0006438 P valyl-tRNA aminoacylation
GO:0016874 F ligase activity
51 O_BomoSK10046_complete:A_BomoSK_comp12022_c0_seq2
141bp
 hypothetical_protein_CaO19.9958_[Candida_albicans_SC5314]
52 O_BomoSK10047_complete:A_BomoSK_comp12023_c0_seq1
152bp
 PREDICTED:_rRNA-processing_protein_UTP23_homolog_[Amyelois_transitella]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
GO:0070181 F small ribosomal subunit rRNA binding
53 O_BomoSK10048_complete:A_BomoSK_comp12023_c0_seq2
255bp
 PREDICTED:_rRNA-processing_protein_UTP23_homolog_[Amyelois_transitella]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
GO:0070181 F small ribosomal subunit rRNA binding
54 O_BomoSK10049_complete:A_BomoSK_comp12023_c0_seq3
152bp
 PREDICTED:_rRNA-processing_protein_UTP23_homolog_[Amyelois_transitella]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
GO:0044822 F RNA binding
GO:0070181 F small ribosomal subunit rRNA binding
55 O_BomoSK1004_5prime_partial:A_BomoSK_comp3786_c0_seq1
229bp
56 O_BomoSK10050_complete:A_BomoSK_comp12026_c0_seq1
242bp
 PREDICTED:_uncharacterized_protein_LOC106717559_[Papilio_machaon]
57 O_BomoSK10051_complete:A_BomoSK_comp12027_c0_seq1
244bp
 PREDICTED:_NAD(P)H-hydrate_epimerase_isoform_X1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
58 O_BomoSK10052_complete:A_BomoSK_comp12027_c0_seq2
267bp
 PREDICTED:_NAD(P)H-hydrate_epimerase_isoform_X1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008152 P metabolic process
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
59 O_BomoSK10053_complete:A_BomoSK_comp12028_c0_seq1
976bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_24_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
60 O_BomoSK10054_complete:A_BomoSK_comp12029_c0_seq1
480bp
 PREDICTED:_uncharacterized_protein_LOC106116430_[Papilio_xuthus]
GO:0003824 F catalytic activity
GO:0006084 P acetyl-CoA metabolic process
GO:0016740 F transferase activity
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