Search ORF from Assembled RNA-Seq

No.	Name Length	Chromosome No./Scaffold Id Scaffold Length	BLAST (vs nr)	Gene ontology
2461	O_BomoSK12215_5prime_partial:A_BomoSK_comp12882_c0_seq3 139bp	Bomo_Chr4	peptidylprolyl_isomerase_[Novosphingobium_acidiphilum]
2462	O_BomoSK12216_complete:A_BomoSK_comp12882_c0_seq3 117bp	Bomo_Chr4	PREDICTED:_uncharacterized_protein_LOC107097056_isoform_X1_[Cyprinodon_variegatus]
2463	O_BomoSK12217_3prime_partial:A_BomoSK_comp12882_c0_seq4 944bp	Bomo_Chr4	PREDICTED:_homeotic_protein_spalt-major-like_isoform_X3_[Bombyx_mori]	GO:0000381 P regulation of alternative mRNA splicing, via spliceosome GO:0001751 P compound eye photoreceptor cell differentiation GO:0003676 F nucleic acid binding GO:0003677 F DNA binding GO:0003700 F DNA-binding transcription factor activity GO:0005634 C nucleus GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0006366 P transcription by RNA polymerase II GO:0007165 P signal transduction GO:0007275 P multicellular organism development GO:0007379 P segment specification GO:0007423 P sensory organ development GO:0007424 P open tracheal system development GO:0007427 P epithelial cell migration, open tracheal system GO:0007438 P oenocyte development GO:0007525 P somatic muscle development GO:0007605 P sensory perception of sound GO:0008584 P male gonad development GO:0008586 P imaginal disc-derived wing vein morphogenesis GO:0021782 P glial cell development GO:0030539 P male genitalia development GO:0035155 P negative regulation of terminal cell fate specification, open tracheal system GO:0035277 P spiracle morphogenesis, open tracheal system GO:0035310 P notum cell fate specification GO:0042659 P regulation of cell fate specification GO:0043565 F sequence-specific DNA binding GO:0044212 F transcription cis-regulatory region binding GO:0045465 P R8 cell differentiation GO:0045466 P R7 cell differentiation GO:0045892 P negative regulation of transcription, DNA-templated GO:0046845 P branched duct epithelial cell fate determination, open tracheal system GO:0046872 F metal ion binding GO:0048098 P antennal joint development GO:0048644 P muscle organ morphogenesis
2464	O_BomoSK12218_5prime_partial:A_BomoSK_comp12882_c0_seq4 139bp	Bomo_Chr4	peptidylprolyl_isomerase_[Novosphingobium_acidiphilum]
2465	O_BomoSK12219_complete:A_BomoSK_comp12882_c0_seq4 117bp	Bomo_Chr4	PREDICTED:_uncharacterized_protein_LOC107097056_isoform_X1_[Cyprinodon_variegatus]
2466	O_BomoSK1221_3prime_partial:A_BomoSK_comp4003_c0_seq1 454bp	Bomo_Chr17	PREDICTED:_WD_repeat-containing_protein_3-like_[Bombyx_mori]	GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005730 C nucleolus GO:0006364 P rRNA processing GO:0030515 F snoRNA binding GO:0031965 C nuclear membrane GO:0032040 C small-subunit processome GO:0034388 C Pwp2p-containing subcomplex of 90S preribosome GO:0044822 F RNA binding
2467	O_BomoSK12220_5prime_partial:A_BomoSK_comp12882_c0_seq4 112bp	Bomo_Chr4	PREDICTED:_uncharacterized_protein_CFAP74_[Opisthocomus_hoazin]
2468	O_BomoSK12221_complete:A_BomoSK_comp12882_c0_seq4 105bp	Bomo_Chr4	RHS_repeat-associated_core_domain_protein_[Prevotella_veroralis_F0319]
2469	O_BomoSK12222_complete:A_BomoSK_comp12884_c0_seq2 236bp	Bomo_Chr15	PREDICTED:_COMM_domain-containing_protein_2-like_isoform_X1_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005737 C cytoplasm GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0008150 P biological_process
2470	O_BomoSK12223_complete:A_BomoSK_comp12884_c0_seq3 138bp	Bomo_Chr15	PREDICTED:_COMM_domain-containing_protein_2-like_isoform_X2_[Bombyx_mori]	GO:0003674 F molecular_function GO:0005575 C cellular_component GO:0005737 C cytoplasm GO:0006351 P transcription, DNA-templated GO:0006355 P regulation of transcription, DNA-templated GO:0008150 P biological_process
2471	O_BomoSK12224_complete:A_BomoSK_comp12885_c0_seq1 977bp	Bomo_Chr15	PREDICTED:_116_kDa_U5_small_nuclear_ribonucleoprotein_component_[Amyelois_transitella]	GO:0000166 F nucleotide binding GO:0003924 F GTPase activity GO:0005525 F GTP binding GO:0005622 C intracellular anatomical structure GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005681 C spliceosomal complex GO:0005737 C cytoplasm GO:0006397 P mRNA processing GO:0006412 P translation GO:0008380 P RNA splicing GO:0015030 C Cajal body GO:0016020 C membrane GO:0016607 C nuclear speck GO:0044822 F RNA binding GO:0071013 C catalytic step 2 spliceosome
2472	O_BomoSK12225_complete:A_BomoSK_comp12885_c0_seq1 182bp	Bomo_Chr15	Os01g0723025_[Oryza_sativa_Japonica_Group]
2473	O_BomoSK12226_complete:A_BomoSK_comp12885_c0_seq1 110bp	Bomo_Chr15	PREDICTED:_pterin-4-alpha-carbinolamine_dehydratase_[Pygoscelis_adeliae]
2474	O_BomoSK12227_complete:A_BomoSK_comp12885_c0_seq1 108bp	Bomo_Chr15	hypothetical_protein_[Pseudomonas_lutea]
2475	O_BomoSK12228_complete:A_BomoSK_comp12886_c0_seq1 525bp	Bomo_Chr23	PREDICTED:_fatty_acyl-CoA_reductase_1_[Papilio_xuthus]	GO:0005777 C peroxisome GO:0005778 C peroxisomal membrane GO:0006629 P lipid metabolic process GO:0008611 P ether lipid biosynthetic process GO:0010025 P wax biosynthetic process GO:0016020 C membrane GO:0016021 C integral component of membrane GO:0016491 F oxidoreductase activity GO:0016620 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor GO:0035336 P long-chain fatty-acyl-CoA metabolic process GO:0050062 F long-chain-fatty-acyl-CoA reductase activity GO:0055114 P obsolete oxidation-reduction process GO:0080019 F fatty-acyl-CoA reductase (alcohol-forming) activity
2476	O_BomoSK12229_complete:A_BomoSK_comp12887_c0_seq1 604bp	Bomo_Chr10	cell_division_cycle_2_like-1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0001824 P blastocyst development GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0004693 F cyclin-dependent protein serine/threonine kinase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005654 C nucleoplasm GO:0005737 C cytoplasm GO:0006468 P protein phosphorylation GO:0007049 P cell cycle GO:0007088 P regulation of mitotic nuclear division GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0050684 P regulation of mRNA processing GO:2001234 P negative regulation of apoptotic signaling pathway
2477	O_BomoSK1222_complete:A_BomoSK_comp4003_c0_seq1 172bp	Bomo_Chr17	hypothetical_protein_JAAARDRAFT_686406_[Jaapia_argillacea_MUCL_33604]
2478	O_BomoSK12230_complete:A_BomoSK_comp12887_c0_seq1 154bp	Bomo_Chr10	Uncharacterised_protein_[Neisseria_meningitidis]
2479	O_BomoSK12231_3prime_partial:A_BomoSK_comp12887_c0_seq2 865bp	Bomo_Chr10	PREDICTED:_cell_division_cycle_2_like-1_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000278 P mitotic cell cycle GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0004693 F cyclin-dependent protein serine/threonine kinase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0006468 P protein phosphorylation GO:0007049 P cell cycle GO:0007155 P cell adhesion GO:0008360 P regulation of cell shape GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0034126 P positive regulation of MyD88-dependent toll-like receptor signaling pathway GO:0051726 P regulation of cell cycle
2480	O_BomoSK12232_complete:A_BomoSK_comp12887_c0_seq2 154bp	Bomo_Chr10	Uncharacterised_protein_[Neisseria_meningitidis]
2481	O_BomoSK12233_3prime_partial:A_BomoSK_comp12887_c0_seq2 100bp	Bomo_Chr10	hypothetical_protein_[Algiphilus_aromaticivorans]
2482	O_BomoSK12234_complete:A_BomoSK_comp12887_c0_seq3 507bp	Bomo_Chr10	cell_division_cycle_2_like-1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0001558 P regulation of cell growth GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0004693 F cyclin-dependent protein serine/threonine kinase activity GO:0005515 F protein binding GO:0005524 F ATP binding GO:0005634 C nucleus GO:0005737 C cytoplasm GO:0006355 P regulation of transcription, DNA-templated GO:0006468 P protein phosphorylation GO:0006915 P apoptotic process GO:0007049 P cell cycle GO:0007067 P mitotic cell cycle GO:0008283 P cell population proliferation GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0044822 F RNA binding GO:0050684 P regulation of mRNA processing GO:0051726 P regulation of cell cycle
2483	O_BomoSK12235_complete:A_BomoSK_comp12887_c0_seq3 111bp	Bomo_Chr10	Uncharacterised_protein_[Neisseria_meningitidis]
2484	O_BomoSK12236_3prime_partial:A_BomoSK_comp12887_c0_seq4 768bp	Bomo_Chr10	PREDICTED:_cell_division_cycle_2_like-1_isoform_X1_[Bombyx_mori]	GO:0000166 F nucleotide binding GO:0000278 P mitotic cell cycle GO:0004672 F protein kinase activity GO:0004674 F protein serine/threonine kinase activity GO:0004693 F cyclin-dependent protein serine/threonine kinase activity GO:0005524 F ATP binding GO:0005634 C nucleus GO:0006468 P protein phosphorylation GO:0007049 P cell cycle GO:0007155 P cell adhesion GO:0008360 P regulation of cell shape GO:0016301 F kinase activity GO:0016310 P phosphorylation GO:0016740 F transferase activity GO:0034126 P positive regulation of MyD88-dependent toll-like receptor signaling pathway GO:0051726 P regulation of cell cycle
2485	O_BomoSK12237_complete:A_BomoSK_comp12887_c0_seq4 111bp	Bomo_Chr10	Uncharacterised_protein_[Neisseria_meningitidis]
2486	O_BomoSK12238_3prime_partial:A_BomoSK_comp12887_c0_seq4 100bp	Bomo_Chr10	hypothetical_protein_[Algiphilus_aromaticivorans]
2487	O_BomoSK12239_3prime_partial:A_BomoSK_comp12888_c0_seq1 116bp	Bomo_Chr9	PREDICTED:_uncharacterized_protein_LOC106134630_[Amyelois_transitella]
2488	O_BomoSK1223_internal:A_BomoSK_comp4005_c0_seq1 270bp	Bomo_Chr7	PREDICTED:_inverted_formin-2-like_[Bombyx_mori]
2489	O_BomoSK12240_3prime_partial:A_BomoSK_comp12888_c0_seq2 116bp	Bomo_Chr9	PREDICTED:_uncharacterized_protein_LOC106134630_[Amyelois_transitella]
2490	O_BomoSK12241_complete:A_BomoSK_comp12888_c0_seq3 226bp	Bomo_Chr9	PREDICTED:_uncharacterized_protein_LOC106134630_[Amyelois_transitella]