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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2431 O_BomoSK12189_complete:A_BomoSK_comp12875_c1_seq2
209bp
 PREDICTED:_ras-related_protein_Rab-18-like_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0001654 P eye development
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007420 P brain development
GO:0008152 P metabolic process
GO:0009925 C basal plasma membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016324 C apical plasma membrane
GO:0019003 F GDP binding
GO:0034389 P lipid droplet organization
GO:0070062 C extracellular exosome
GO:0071782 C endoplasmic reticulum tubular network
GO:0071786 P endoplasmic reticulum tubular network organization
2432 O_BomoSK1218_3prime_partial:A_BomoSK_comp3999_c0_seq1
277bp
 PREDICTED:_GPN-loop_GTPase_3_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
2433 O_BomoSK12190_complete:A_BomoSK_comp12876_c1_seq1
207bp
 PREDICTED:_zinc_finger_protein_16-like_isoform_X2_[Bombyx_mori]
2434 O_BomoSK12191_complete:A_BomoSK_comp12876_c1_seq2
214bp
 PREDICTED:_zinc_finger_protein_16-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
2435 O_BomoSK12192_complete:A_BomoSK_comp12876_c1_seq3
456bp
 PREDICTED:_zinc_finger_protein_16-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
2436 O_BomoSK12193_3prime_partial:A_BomoSK_comp12877_c0_seq1
199bp
 WW_domain_binding_protein_4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0046872 F metal ion binding
2437 O_BomoSK12194_3prime_partial:A_BomoSK_comp12877_c0_seq2
292bp
 WW_domain_binding_protein_4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005886 C plasma membrane
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0045292 P mRNA cis splicing, via spliceosome
GO:0046872 F metal ion binding
GO:0070064 F proline-rich region binding
2438 O_BomoSK12195_complete:A_BomoSK_comp12877_c0_seq2
112bp
 hypothetical_protein_D910_03122,_partial_[Dendroctonus_ponderosae]
2439 O_BomoSK12196_3prime_partial:A_BomoSK_comp12877_c0_seq3
232bp
 WW_domain_binding_protein_4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0046872 F metal ion binding
2440 O_BomoSK12197_complete:A_BomoSK_comp12878_c0_seq2
452bp
 Heterogeneous_nuclear_ribonucleoprotein_A1_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
2441 O_BomoSK12198_complete:A_BomoSK_comp12878_c0_seq2
102bp
 hypothetical_protein_cypCar_00042510,_partial_[Cyprinus_carpio]
2442 O_BomoSK12199_complete:A_BomoSK_comp12878_c0_seq3
452bp
 Heterogeneous_nuclear_ribonucleoprotein_A1_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
2443 O_BomoSK1219_internal:A_BomoSK_comp4000_c0_seq1
152bp
 PREDICTED:_uncharacterized_protein_LOC106132264_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0007040 P lysosome organization
GO:0015031 P protein transport
GO:0015630 C microtubule cytoskeleton
GO:0032510 P endosome to lysosome transport via multivesicular body sorting pathway
GO:0042267 P natural killer cell mediated cytotoxicity
GO:0043473 P pigmentation
2444 O_BomoSK121_internal:A_BomoSK_comp408_c1_seq1
103bp
 PREDICTED:_uncharacterized_protein_LOC101742281_[Bombyx_mori]
2445 O_BomoSK12200_complete:A_BomoSK_comp12881_c0_seq1
1378bp
 PREDICTED:_uncharacterized_protein_LOC107073003_[Polistes_dominula]
2446 O_BomoSK12201_complete:A_BomoSK_comp12881_c0_seq2
899bp
 hypothetical_protein_ALC62_05715_[Cyphomyrmex_costatus]
2447 O_BomoSK12202_complete:A_BomoSK_comp12881_c0_seq2
406bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC105287085_[Cerapachys_biroi]
2448 O_BomoSK12203_complete:A_BomoSK_comp12881_c0_seq3
1359bp
 PREDICTED:_uncharacterized_protein_LOC107073003_[Polistes_dominula]
2449 O_BomoSK12204_complete:A_BomoSK_comp12881_c0_seq4
880bp
 hypothetical_protein_ALC62_05715_[Cyphomyrmex_costatus]
2450 O_BomoSK12205_complete:A_BomoSK_comp12881_c0_seq4
406bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC105287085_[Cerapachys_biroi]
2451 O_BomoSK12206_3prime_partial:A_BomoSK_comp12882_c0_seq1
724bp
 PREDICTED:_homeotic_protein_spalt-major-like_isoform_X1_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007423 P sensory organ development
GO:0007424 P open tracheal system development
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007438 P oenocyte development
GO:0007525 P somatic muscle development
GO:0007605 P sensory perception of sound
GO:0008584 P male gonad development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0021782 P glial cell development
GO:0030539 P male genitalia development
GO:0035155 P negative regulation of terminal cell fate specification, open tracheal system
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035310 P notum cell fate specification
GO:0042659 P regulation of cell fate specification
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045465 P R8 cell differentiation
GO:0045466 P R7 cell differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046845 P branched duct epithelial cell fate determination, open tracheal system
GO:0046872 F metal ion binding
GO:0048098 P antennal joint development
GO:0048644 P muscle organ morphogenesis
2452 O_BomoSK12207_5prime_partial:A_BomoSK_comp12882_c0_seq1
139bp
 peptidylprolyl_isomerase_[Novosphingobium_acidiphilum]
2453 O_BomoSK12208_complete:A_BomoSK_comp12882_c0_seq1
117bp
 PREDICTED:_uncharacterized_protein_LOC107097056_isoform_X1_[Cyprinodon_variegatus]
2454 O_BomoSK12209_3prime_partial:A_BomoSK_comp12882_c0_seq2
1004bp
 PREDICTED:_homeotic_protein_spalt-major-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0046872 F metal ion binding
2455 O_BomoSK1220_5prime_partial:A_BomoSK_comp4000_c0_seq2
169bp
 PREDICTED:_uncharacterized_protein_LOC106132264_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0007040 P lysosome organization
GO:0015031 P protein transport
GO:0015630 C microtubule cytoskeleton
GO:0032510 P endosome to lysosome transport via multivesicular body sorting pathway
GO:0042267 P natural killer cell mediated cytotoxicity
GO:0043473 P pigmentation
2456 O_BomoSK12210_5prime_partial:A_BomoSK_comp12882_c0_seq2
139bp
 peptidylprolyl_isomerase_[Novosphingobium_acidiphilum]
2457 O_BomoSK12211_complete:A_BomoSK_comp12882_c0_seq2
117bp
 PREDICTED:_uncharacterized_protein_LOC107097056_isoform_X1_[Cyprinodon_variegatus]
2458 O_BomoSK12212_5prime_partial:A_BomoSK_comp12882_c0_seq2
112bp
 PREDICTED:_uncharacterized_protein_CFAP74_[Opisthocomus_hoazin]
2459 O_BomoSK12213_complete:A_BomoSK_comp12882_c0_seq2
105bp
 RHS_repeat-associated_core_domain_protein_[Prevotella_veroralis_F0319]
2460 O_BomoSK12214_3prime_partial:A_BomoSK_comp12882_c0_seq3
664bp
 PREDICTED:_homeotic_protein_spalt-major-like_isoform_X3_[Bombyx_mori]
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0001751 P compound eye photoreceptor cell differentiation
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007379 P segment specification
GO:0007423 P sensory organ development
GO:0007424 P open tracheal system development
GO:0007427 P epithelial cell migration, open tracheal system
GO:0007438 P oenocyte development
GO:0007525 P somatic muscle development
GO:0007605 P sensory perception of sound
GO:0008584 P male gonad development
GO:0008586 P imaginal disc-derived wing vein morphogenesis
GO:0021782 P glial cell development
GO:0030539 P male genitalia development
GO:0035155 P negative regulation of terminal cell fate specification, open tracheal system
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035310 P notum cell fate specification
GO:0042659 P regulation of cell fate specification
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045465 P R8 cell differentiation
GO:0045466 P R7 cell differentiation
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046845 P branched duct epithelial cell fate determination, open tracheal system
GO:0046872 F metal ion binding
GO:0048098 P antennal joint development
GO:0048644 P muscle organ morphogenesis
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