SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2131 O_BomoSK11919_complete:A_BomoSK_comp12777_c0_seq1
430bp
 PREDICTED:_protein_ROP_isoform_X2_[Papilio_xuthus]
GO:0000149 F SNARE binding
GO:0000281 P mitotic cytokinesis
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006904 P vesicle docking involved in exocytosis
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0009416 P response to light stimulus
GO:0012506 C vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016082 P synaptic vesicle priming
GO:0016192 P vesicle-mediated transport
GO:0019898 C extrinsic component of membrane
GO:0019905 F syntaxin binding
GO:0030707 P ovarian follicle cell development
GO:0032940 P secretion by cell
GO:0043195 C terminal bouton
GO:0048489 P synaptic vesicle transport
2132 O_BomoSK1191_3prime_partial:A_BomoSK_comp3981_c0_seq1
524bp
 PREDICTED:_TAF5-like_RNA_polymerase_II_p300/CBP-associated_factor-associated_factor_65_kDa_subunit_5L_isoform_X1_[Papilio_polytes]
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0030914 C SAGA complex
GO:0033276 C transcription factor TFTC complex
GO:0043966 P histone H3 acetylation
2133 O_BomoSK11920_complete:A_BomoSK_comp12777_c0_seq1
100bp
 putative_serine/threonine-protein_kinase_[Morus_notabilis]
2134 O_BomoSK11921_5prime_partial:A_BomoSK_comp12777_c0_seq2
589bp
 PREDICTED:_protein_ROP_[Amyelois_transitella]
GO:0000149 F SNARE binding
GO:0000281 P mitotic cytokinesis
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006904 P vesicle docking involved in exocytosis
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0009416 P response to light stimulus
GO:0012506 C vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016082 P synaptic vesicle priming
GO:0016192 P vesicle-mediated transport
GO:0019898 C extrinsic component of membrane
GO:0019905 F syntaxin binding
GO:0030707 P ovarian follicle cell development
GO:0032940 P secretion by cell
GO:0043195 C terminal bouton
GO:0048489 P synaptic vesicle transport
2135 O_BomoSK11922_complete:A_BomoSK_comp12777_c0_seq2
100bp
 putative_serine/threonine-protein_kinase_[Morus_notabilis]
2136 O_BomoSK11923_complete:A_BomoSK_comp12778_c0_seq1
457bp
 Protein_unzipped_[Papilio_xuthus]
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007413 P axonal fasciculation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
2137 O_BomoSK11924_complete:A_BomoSK_comp12779_c0_seq1
229bp
 PREDICTED:_circadian_clock-controlled_protein-like_[Amyelois_transitella]
2138 O_BomoSK11925_complete:A_BomoSK_comp12780_c0_seq1
283bp
 PREDICTED:_chloride_intracellular_channel_isoform_X1_[Bombyx_mori]
GO:0002064 P epithelial cell development
GO:0004364 F glutathione transferase activity
GO:0005244 F voltage-gated ion channel activity
GO:0005254 F chloride channel activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005887 C integral component of plasma membrane
GO:0006749 P glutathione metabolic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0034707 C chloride channel complex
GO:0034765 P regulation of ion transmembrane transport
GO:0035150 P regulation of tube size
GO:0043296 C apical junction complex
GO:1902476 P chloride transmembrane transport
2139 O_BomoSK11926_complete:A_BomoSK_comp12780_c0_seq2
261bp
 chloride_intracellular_channel_isoform_1_[Bombyx_mori]
GO:0002064 P epithelial cell development
GO:0004364 F glutathione transferase activity
GO:0005244 F voltage-gated ion channel activity
GO:0005254 F chloride channel activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005887 C integral component of plasma membrane
GO:0006749 P glutathione metabolic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0034707 C chloride channel complex
GO:0034765 P regulation of ion transmembrane transport
GO:0035150 P regulation of tube size
GO:0043296 C apical junction complex
GO:1902476 P chloride transmembrane transport
2140 O_BomoSK11927_complete:A_BomoSK_comp12780_c0_seq3
273bp
 PREDICTED:_chloride_intracellular_channel_isoform_X1_[Bombyx_mori]
GO:0002064 P epithelial cell development
GO:0004364 F glutathione transferase activity
GO:0005244 F voltage-gated ion channel activity
GO:0005254 F chloride channel activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005887 C integral component of plasma membrane
GO:0006749 P glutathione metabolic process
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016324 C apical plasma membrane
GO:0034707 C chloride channel complex
GO:0034765 P regulation of ion transmembrane transport
GO:0035150 P regulation of tube size
GO:0043296 C apical junction complex
GO:1902476 P chloride transmembrane transport
2141 O_BomoSK11928_internal:A_BomoSK_comp12781_c0_seq1
467bp
 PREDICTED:_spectrin_beta_chain,_non-erythrocytic_5_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0002046 F opsin binding
GO:0003779 F actin binding
GO:0005088 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005875 C microtubule associated complex
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007030 P Golgi organization
GO:0007041 P lysosomal transport
GO:0007411 P axon guidance
GO:0008022 F protein C-terminus binding
GO:0008091 C spectrin
GO:0016020 C membrane
GO:0019894 F kinesin binding
GO:0030036 P actin cytoskeleton organization
GO:0030507 F spectrin binding
GO:0030863 C cortical cytoskeleton
GO:0032029 F myosin tail binding
GO:0032391 C photoreceptor connecting cilium
GO:0034452 F dynactin binding
GO:0043547 P positive regulation of GTPase activity
GO:0043621 F protein self-association
GO:0045179 C apical cortex
GO:0045505 F dynein intermediate chain binding
GO:0046982 F protein heterodimerization activity
GO:0051015 F actin filament binding
GO:0051260 P protein homooligomerization
GO:0051693 P actin filament capping
GO:0070062 C extracellular exosome
GO:0097381 C photoreceptor disc membrane
2142 O_BomoSK11929_complete:A_BomoSK_comp12781_c0_seq1
105bp
2143 O_BomoSK1192_3prime_partial:A_BomoSK_comp3982_c0_seq1
412bp
 PREDICTED:_protein_VAC14_homolog_isoform_X2_[Bombyx_mori]
GO:0005768 C endosome
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0043550 P regulation of lipid kinase activity
GO:0070772 C PAS complex
2144 O_BomoSK11930_internal:A_BomoSK_comp12781_c0_seq2
1185bp
 PREDICTED:_spectrin_beta_chain,_non-erythrocytic_5_[Bombyx_mori]
GO:0000165 P MAPK cascade
GO:0003779 F actin binding
GO:0005088 F guanyl-nucleotide exchange factor activity
GO:0005200 F structural constituent of cytoskeleton
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0007411 P axon guidance
GO:0008091 C spectrin
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0019905 F syntaxin binding
GO:0031532 P actin cytoskeleton reorganization
GO:0032403 F protein-containing complex binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:0047485 F protein N-terminus binding
GO:0051693 P actin filament capping
GO:0070062 C extracellular exosome
GO:1903561 C extracellular vesicle
2145 O_BomoSK11931_5prime_partial:A_BomoSK_comp12781_c0_seq2
208bp
2146 O_BomoSK11932_complete:A_BomoSK_comp12781_c0_seq2
163bp
 PREDICTED:_protein_SMG7-like_[Elaeis_guineensis]
2147 O_BomoSK11933_complete:A_BomoSK_comp12781_c0_seq2
145bp
2148 O_BomoSK11934_complete:A_BomoSK_comp12781_c0_seq2
105bp
2149 O_BomoSK11935_complete:A_BomoSK_comp12782_c0_seq1
416bp
 PREDICTED:_G_patch_domain_and_KOW_motifs-containing_protein_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008150 P biological_process
2150 O_BomoSK11936_complete:A_BomoSK_comp12782_c0_seq2
291bp
 PREDICTED:_G_patch_domain_and_KOW_motifs-containing_protein_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0008150 P biological_process
2151 O_BomoSK11937_complete:A_BomoSK_comp12783_c0_seq1
537bp
 PREDICTED:_uncharacterized_protein_LOC106132394_isoform_X2_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0008150 P biological_process
2152 O_BomoSK11938_5prime_partial:A_BomoSK_comp12784_c0_seq1
658bp
 PREDICTED:_putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX16_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0007275 P multicellular organism development
GO:0007281 P germ cell development
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0010172 P embryonic body morphogenesis
GO:0016787 F hydrolase activity
GO:0040022 P feminization of hermaphroditic germ-line
GO:0044822 F RNA binding
GO:0048589 P developmental growth
2153 O_BomoSK11939_complete:A_BomoSK_comp12784_c0_seq1
112bp
2154 O_BomoSK1193_complete:A_BomoSK_comp3982_c0_seq1
229bp
 hypothetical_protein_ALC56_09593_[Trachymyrmex_septentrionalis]
2155 O_BomoSK11940_3prime_partial:A_BomoSK_comp12784_c0_seq2
231bp
 PREDICTED:_putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX16_isoform_X2_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
2156 O_BomoSK11941_complete:A_BomoSK_comp12786_c0_seq1
440bp
 PREDICTED:_acyl-CoA_synthetase_family_member_3,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016874 F ligase activity
2157 O_BomoSK11942_complete:A_BomoSK_comp12786_c0_seq1
186bp
 hypothetical_protein_AHiyo6_14200_[Arthrobacter_sp._Hiyo6]
2158 O_BomoSK11943_complete:A_BomoSK_comp12786_c0_seq2
624bp
 PREDICTED:_acyl-CoA_synthetase_family_member_3,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016874 F ligase activity
2159 O_BomoSK11944_complete:A_BomoSK_comp12786_c0_seq2
100bp
 hypothetical_protein_AHiyo6_14200_[Arthrobacter_sp._Hiyo6]
2160 O_BomoSK11945_complete:A_BomoSK_comp12787_c0_seq1
196bp
 PREDICTED:_regulator_of_microtubule_dynamics_protein_1-like_[Plutella_xylostella]
GO:0000922 C spindle pole
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
previous next from show/33939

- SilkBase 1999-2023 -