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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2041 O_BomoSK11838_complete:A_BomoSK_comp12751_c0_seq4
449bp
 PREDICTED:_NEDD8-activating_enzyme_E1_catalytic_subunit_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0008641 F ubiquitin-like modifier activating enzyme activity
GO:0016874 F ligase activity
GO:0016881 F acid-amino acid ligase activity
GO:0019781 F NEDD8 activating enzyme activity
GO:0045116 P protein neddylation
2042 O_BomoSK11839_complete:A_BomoSK_comp12753_c0_seq1
205bp
 PREDICTED:_uncharacterized_protein_LOC105386439_[Plutella_xylostella]
GO:0070301 P cellular response to hydrogen peroxide
2043 O_BomoSK1183_3prime_partial:A_BomoSK_comp3975_c0_seq1
1308bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101744503_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0008033 P tRNA processing
GO:0008150 P biological_process
2044 O_BomoSK11840_internal:A_BomoSK_comp12754_c0_seq1
164bp
 PREDICTED:_uncharacterized_protein_LOC101744337_[Bombyx_mori]
2045 O_BomoSK11841_internal:A_BomoSK_comp12754_c0_seq2
293bp
 PREDICTED:_uncharacterized_protein_LOC101744337_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007076 P mitotic chromosome condensation
GO:0030261 P chromosome condensation
GO:0046982 F protein heterodimerization activity
GO:0051276 P chromosome organization
GO:0051301 P cell division
2046 O_BomoSK11842_5prime_partial:A_BomoSK_comp12754_c0_seq2
106bp
 hypothetical_protein_JCGZ_25488_[Jatropha_curcas]
2047 O_BomoSK11843_5prime_partial:A_BomoSK_comp12755_c0_seq2
439bp
 PREDICTED:_retinoblastoma-like_protein_1_isoform_X2_[Papilio_xuthus]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0008134 F transcription factor binding
GO:0010629 P negative regulation of gene expression
GO:0016568 P chromatin organization
GO:0043550 P regulation of lipid kinase activity
GO:0051726 P regulation of cell cycle
GO:1990841 F promoter-specific chromatin binding
2048 O_BomoSK11844_5prime_partial:A_BomoSK_comp12755_c0_seq3
541bp
 PREDICTED:_retinoblastoma-like_protein_1_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0008134 F transcription factor binding
GO:0010629 P negative regulation of gene expression
GO:0016568 P chromatin organization
GO:0043550 P regulation of lipid kinase activity
GO:0051726 P regulation of cell cycle
GO:1990841 F promoter-specific chromatin binding
2049 O_BomoSK11845_complete:A_BomoSK_comp12757_c0_seq1
549bp
 hypothetical_protein_KGM_20642_[Danaus_plexippus]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000784 C chromosome, telomeric region
GO:0000993 F RNA polymerase II complex binding
GO:0001711 P endodermal cell fate commitment
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006378 P mRNA polyadenylation
GO:0007049 P cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0010390 P histone monoubiquitination
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0019827 P stem cell population maintenance
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0031442 P positive regulation of mRNA 3'-end processing
GO:0031648 P protein destabilization
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0033523 P histone H2B ubiquitination
GO:0045638 P negative regulation of myeloid cell differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048147 P negative regulation of fibroblast proliferation
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0071222 P cellular response to lipopolysaccharide
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
2050 O_BomoSK11846_complete:A_BomoSK_comp12758_c0_seq1
233bp
 PREDICTED:_uncharacterized_protein_LOC106133521_[Amyelois_transitella]
2051 O_BomoSK11847_complete:A_BomoSK_comp12758_c0_seq2
152bp
 PREDICTED:_uncharacterized_protein_LOC106124724_isoform_X5_[Papilio_xuthus]
2052 O_BomoSK11848_complete:A_BomoSK_comp12758_c0_seq3
235bp
 PREDICTED:_uncharacterized_protein_LOC106133521_[Amyelois_transitella]
2053 O_BomoSK11849_5prime_partial:A_BomoSK_comp12758_c0_seq8
182bp
 PREDICTED:_uncharacterized_protein_LOC106133521_[Amyelois_transitella]
2054 O_BomoSK1184_complete:A_BomoSK_comp3975_c0_seq1
172bp
 succinate--CoA_ligase_subunit_alpha_[Desulfobacula_sp._TS]
2055 O_BomoSK11850_complete:A_BomoSK_comp12758_c0_seq9
200bp
 PREDICTED:_uncharacterized_protein_LOC106133521_[Amyelois_transitella]
2056 O_BomoSK11851_5prime_partial:A_BomoSK_comp12759_c1_seq3
897bp
 PREDICTED:_phosphatidylinositol_4-kinase_alpha_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004430 F 1-phosphatidylinositol 4-kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0030660 C Golgi-associated vesicle membrane
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0048015 P phosphatidylinositol-mediated signaling
2057 O_BomoSK11852_complete:A_BomoSK_comp12759_c1_seq3
205bp
2058 O_BomoSK11853_5prime_partial:A_BomoSK_comp12759_c1_seq3
190bp
 hypothetical_protein_HR12_07155_[Microbacterium_sp._SUBG005]
2059 O_BomoSK11854_complete:A_BomoSK_comp12759_c1_seq3
138bp
 transcriptional_regulator_[Thermoproteus_sp._CIS_19]
2060 O_BomoSK11855_complete:A_BomoSK_comp12760_c0_seq1
176bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_7-like_[Amyelois_transitella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
2061 O_BomoSK11856_complete:A_BomoSK_comp12760_c0_seq2
244bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_7-like_[Amyelois_transitella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
2062 O_BomoSK11857_complete:A_BomoSK_comp12760_c0_seq3
301bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_7-like_[Amyelois_transitella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
2063 O_BomoSK11858_complete:A_BomoSK_comp12760_c0_seq5
176bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_7-like_[Amyelois_transitella]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
2064 O_BomoSK11859_complete:A_BomoSK_comp12760_c0_seq5
124bp
 PREDICTED:_CCR4-NOT_transcription_complex_subunit_7-like_isoform_X1_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
2065 O_BomoSK1185_5prime_partial:A_BomoSK_comp3975_c0_seq1
143bp
 hypothetical_protein_PLICRDRAFT_106449_[Plicaturopsis_crispa_FD-325_SS-3]
2066 O_BomoSK11860_complete:A_BomoSK_comp12763_c0_seq1
465bp
 PREDICTED:_RUN_and_FYVE_domain-containing_protein_2_isoform_X1_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0046872 F metal ion binding
2067 O_BomoSK11861_complete:A_BomoSK_comp12763_c0_seq1
135bp
2068 O_BomoSK11862_5prime_partial:A_BomoSK_comp12763_c0_seq2
454bp
 PREDICTED:_retinoid-inducible_serine_carboxypeptidase-like_[Papilio_polytes]
GO:0004180 F carboxypeptidase activity
GO:0004185 F serine-type carboxypeptidase activity
GO:0005576 C extracellular region
GO:0005829 C cytosol
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
GO:0042573 P retinoic acid metabolic process
GO:0045776 P negative regulation of blood pressure
GO:0045909 P vasodilation
GO:0051603 P proteolysis involved in cellular protein catabolic process
GO:0070062 C extracellular exosome
2069 O_BomoSK11863_complete:A_BomoSK_comp12763_c0_seq2
145bp
 PREDICTED:_RUN_and_FYVE_domain-containing_protein_2_isoform_X5_[Bombyx_mori]
GO:0005634 C nucleus
GO:0046872 F metal ion binding
2070 O_BomoSK11864_complete:A_BomoSK_comp12763_c0_seq3
658bp
 PREDICTED:_RUN_and_FYVE_domain-containing_protein_2_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0046872 F metal ion binding
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