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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1411 O_BomoSK11270_5prime_partial:A_BomoSK_comp12562_c0_seq1
103bp
 PREDICTED:_actin-binding_protein_IPP_[Microtus_ochrogaster]
1412 O_BomoSK11271_3prime_partial:A_BomoSK_comp12562_c0_seq2
449bp
 PREDICTED:_tudor_and_KH_domain-containing_protein_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0007140 P male meiotic nuclear division
GO:0007283 P spermatogenesis
GO:0009566 P fertilization
GO:0030154 P cell differentiation
GO:0031047 P gene silencing by RNA
GO:0034587 P piRNA metabolic process
GO:0043046 P DNA methylation involved in gamete generation
GO:0071546 C pi-body
GO:0071547 C piP-body
1413 O_BomoSK11272_5prime_partial:A_BomoSK_comp12562_c0_seq2
122bp
1414 O_BomoSK11273_5prime_partial:A_BomoSK_comp12562_c0_seq2
103bp
 PREDICTED:_actin-binding_protein_IPP_[Microtus_ochrogaster]
1415 O_BomoSK11274_complete:A_BomoSK_comp12563_c0_seq1
1218bp
 PREDICTED:_protein_suppressor_of_sable_isoform_X2_[Bombyx_mori]
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
1416 O_BomoSK11275_complete:A_BomoSK_comp12563_c0_seq1
106bp
 general_secretion_pathway_protein_GspE,_partial_[Thiotrichales_bacterium_SG8_50]
1417 O_BomoSK11276_complete:A_BomoSK_comp12563_c0_seq2
1185bp
 PREDICTED:_protein_suppressor_of_sable_isoform_X2_[Bombyx_mori]
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
1418 O_BomoSK11277_complete:A_BomoSK_comp12563_c0_seq2
106bp
 general_secretion_pathway_protein_GspE,_partial_[Thiotrichales_bacterium_SG8_50]
1419 O_BomoSK11278_3prime_partial:A_BomoSK_comp12564_c0_seq1
484bp
 PREDICTED:_transmembrane_and_coiled-coil_domains_protein_2_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1420 O_BomoSK11279_complete:A_BomoSK_comp12564_c0_seq1
137bp
 hypothetical_protein_TI04_00225_[Achromatium_sp._WMS2]
1421 O_BomoSK1127_complete:A_BomoSK_comp3900_c0_seq1
443bp
 PREDICTED:_flotillin-2_[Papilio_polytes]
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0007155 P cell adhesion
GO:0016020 C membrane
GO:0016600 C flotillin complex
GO:0035011 P melanotic encapsulation of foreign target
1422 O_BomoSK11280_complete:A_BomoSK_comp12565_c0_seq1
292bp
 CRAL-TRIO_domain-containing_protein,_partial_[Manduca_sexta]
GO:0005215 F transporter activity
GO:0005622 C intracellular anatomical structure
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0006810 P transport
GO:0007040 P lysosome organization
GO:0008289 F lipid binding
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0080025 F phosphatidylinositol-3,5-bisphosphate binding
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
1423 O_BomoSK11281_complete:A_BomoSK_comp12566_c0_seq1
175bp
 PREDICTED:_cell_growth_regulator_with_RING_finger_domain_protein_1-like_[Bombyx_mori]
1424 O_BomoSK11282_complete:A_BomoSK_comp12567_c0_seq1
157bp
 RNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
1425 O_BomoSK11283_complete:A_BomoSK_comp12567_c0_seq1
108bp
1426 O_BomoSK11284_complete:A_BomoSK_comp12567_c0_seq2
160bp
 PREDICTED:_RNA-binding_protein_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
1427 O_BomoSK11285_complete:A_BomoSK_comp12567_c0_seq2
108bp
1428 O_BomoSK11286_complete:A_BomoSK_comp12567_c0_seq3
160bp
 PREDICTED:_RNA-binding_protein_1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
1429 O_BomoSK11287_complete:A_BomoSK_comp12567_c0_seq4
157bp
 RNA-binding_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
1430 O_BomoSK11288_complete:A_BomoSK_comp12567_c0_seq5
179bp
1431 O_BomoSK11289_complete:A_BomoSK_comp12567_c0_seq5
143bp
 RNA-binding_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0001178 P regulation of transcriptional start site selection at RNA polymerase II promoter
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006376 P mRNA splice site selection
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0031440 P regulation of mRNA 3'-end processing
GO:0035327 C euchromatin
GO:0045292 P mRNA cis splicing, via spliceosome
1432 O_BomoSK1128_complete:A_BomoSK_comp3900_c0_seq1
109bp
 Lectin_protein_kinase_family_protein_[Zostera_marina]
1433 O_BomoSK11290_5prime_partial:A_BomoSK_comp12568_c0_seq1
1183bp
 MLE_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000785 C chromatin
GO:0000805 C X chromosome
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0007549 P dosage compensation
GO:0008026 F helicase activity
GO:0008340 P determination of adult lifespan
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0016456 C X chromosome located dosage compensation complex, transcription activating
GO:0016457 P dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome
GO:0016787 F hydrolase activity
GO:0031453 P positive regulation of heterochromatin assembly
GO:0044822 F RNA binding
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048675 P axon extension
GO:0072487 C MSL complex
1434 O_BomoSK11291_complete:A_BomoSK_comp12568_c0_seq1
148bp
 zinc_ABC_transporter_ATP-binding_protein_[Lactococcus_lactis]
1435 O_BomoSK11292_complete:A_BomoSK_comp12568_c0_seq1
144bp
 hypothetical_protein_CWATWH0003_0813_[Crocosphaera_watsonii_WH_0003]
1436 O_BomoSK11293_complete:A_BomoSK_comp12568_c0_seq1
107bp
 PREDICTED:_myomesin-1_isoform_X2_[Equus_caballus]
1437 O_BomoSK11294_complete:A_BomoSK_comp12568_c0_seq1
106bp
 Uncharacterised_protein_[Mycobacterium_abscessus]
1438 O_BomoSK11295_complete:A_BomoSK_comp12568_c0_seq1
100bp
 PREDICTED:_proton-coupled_folate_transporter_[Chrysemys_picta_bellii]
1439 O_BomoSK11296_complete:A_BomoSK_comp12568_c0_seq2
1046bp
 MLE_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000785 C chromatin
GO:0000805 C X chromosome
GO:0003676 F nucleic acid binding
GO:0003682 F chromatin binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005665 C RNA polymerase II, core complex
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0007549 P dosage compensation
GO:0008026 F helicase activity
GO:0008340 P determination of adult lifespan
GO:0009047 P dosage compensation by hyperactivation of X chromosome
GO:0016456 C X chromosome located dosage compensation complex, transcription activating
GO:0016457 P dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome
GO:0016787 F hydrolase activity
GO:0031453 P positive regulation of heterochromatin assembly
GO:0044822 F RNA binding
GO:0045433 P male courtship behavior, veined wing generated song production
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048675 P axon extension
GO:0072487 C MSL complex
1440 O_BomoSK11297_complete:A_BomoSK_comp12568_c0_seq2
148bp
 zinc_ABC_transporter_ATP-binding_protein_[Lactococcus_lactis]
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