SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/33939
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
10861 O_BomoSK19777_complete:A_BomoSK_comp14271_c0_seq20
288bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
10862 O_BomoSK19778_complete:A_BomoSK_comp14271_c0_seq21
322bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007601 P visual perception
GO:0046872 F metal ion binding
GO:0050896 P response to stimulus
10863 O_BomoSK19779_complete:A_BomoSK_comp14272_c0_seq1
313bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
10864 O_BomoSK1977_3prime_partial:A_BomoSK_comp4815_c0_seq1
476bp
 PREDICTED:_THO_complex_subunit_1_[Papilio_machaon]
GO:0000018 P regulation of DNA recombination
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0006915 P apoptotic process
GO:0007165 P signal transduction
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
GO:0031297 P replication fork processing
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0042981 P regulation of apoptotic process
GO:0045171 C intercellular bridge
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048297 P negative regulation of isotype switching to IgA isotypes
GO:0051028 P mRNA transport
GO:2000002 P negative regulation of DNA damage checkpoint
10865 O_BomoSK19780_complete:A_BomoSK_comp14272_c0_seq1
119bp
GO:0003676 F nucleic acid binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0022625 C cytosolic large ribosomal subunit
GO:0030687 C preribosome, large subunit precursor
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
GO:0046872 F metal ion binding
10866 O_BomoSK19781_complete:A_BomoSK_comp14272_c0_seq2
506bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
10867 O_BomoSK19782_complete:A_BomoSK_comp14272_c0_seq3
313bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
10868 O_BomoSK19783_complete:A_BomoSK_comp14272_c0_seq3
178bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
10869 O_BomoSK19784_complete:A_BomoSK_comp14272_c0_seq4
491bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
10870 O_BomoSK19785_complete:A_BomoSK_comp14272_c0_seq4
119bp
GO:0003676 F nucleic acid binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005737 C cytoplasm
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0022625 C cytosolic large ribosomal subunit
GO:0030687 C preribosome, large subunit precursor
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
GO:0046872 F metal ion binding
10871 O_BomoSK19786_complete:A_BomoSK_comp14272_c0_seq6
491bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
10872 O_BomoSK19787_complete:A_BomoSK_comp14272_c0_seq6
178bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
10873 O_BomoSK19788_complete:A_BomoSK_comp14272_c0_seq7
684bp
GO:0004843 F thiol-dependent deubiquitinase
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
10874 O_BomoSK19789_complete:A_BomoSK_comp14273_c0_seq1
291bp
GO:0005215 F transporter activity
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
10875 O_BomoSK1978_5prime_partial:A_BomoSK_comp4817_c0_seq1
365bp
 fructose-1,6-bisphosphatase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005975 P carbohydrate metabolic process
GO:0006002 P fructose 6-phosphate metabolic process
GO:0006094 P gluconeogenesis
GO:0006111 P regulation of gluconeogenesis
GO:0008152 P metabolic process
GO:0016208 F AMP binding
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0030308 P negative regulation of cell growth
GO:0035690 P cellular response to xenobiotic stimulus
GO:0042132 F fructose 1,6-bisphosphate 1-phosphatase activity
GO:0042578 F phosphoric ester hydrolase activity
GO:0045820 P negative regulation of glycolytic process
GO:0046580 P negative regulation of Ras protein signal transduction
GO:0046872 F metal ion binding
GO:0048029 F monosaccharide binding
GO:0051289 P protein homotetramerization
GO:0071286 P cellular response to magnesium ion
10876 O_BomoSK19790_complete:A_BomoSK_comp14273_c0_seq3
325bp
GO:0005215 F transporter activity
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
10877 O_BomoSK19791_complete:A_BomoSK_comp14273_c1_seq1
284bp
GO:0004252 F serine-type endopeptidase activity
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008236 F serine-type peptidase activity
GO:0016787 F hydrolase activity
10878 O_BomoSK19792_5prime_partial:A_BomoSK_comp14274_c0_seq1
598bp
10879 O_BomoSK19793_complete:A_BomoSK_comp14274_c0_seq1
197bp
10880 O_BomoSK19794_3prime_partial:A_BomoSK_comp14274_c0_seq2
319bp
10881 O_BomoSK19795_complete:A_BomoSK_comp14274_c0_seq2
113bp
10882 O_BomoSK19796_3prime_partial:A_BomoSK_comp14274_c0_seq3
406bp
10883 O_BomoSK19797_complete:A_BomoSK_comp14274_c0_seq3
113bp
10884 O_BomoSK19798_complete:A_BomoSK_comp14274_c0_seq4
153bp
10885 O_BomoSK19799_complete:A_BomoSK_comp14275_c0_seq1
1138bp
GO:0008270 F zinc ion binding
GO:0016874 F ligase activity
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0071600 P otic vesicle morphogenesis
GO:0071797 C LUBAC complex
GO:0097039 P protein linear polyubiquitination
10886 O_BomoSK1979_complete:A_BomoSK_comp4818_c0_seq1
335bp
 PREDICTED:_meteorin-like_protein_[Bombyx_mori]
GO:0005179 F hormone activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0009409 P response to cold
GO:0014850 P response to muscle activity
GO:0045444 P fat cell differentiation
GO:0050728 P negative regulation of inflammatory response
GO:0050873 P brown fat cell differentiation
GO:0070062 C extracellular exosome
GO:0090336 P positive regulation of brown fat cell differentiation
GO:2000507 P energy homeostasis
10887 O_BomoSK197_internal:A_BomoSK_comp654_c1_seq1
335bp
 PREDICTED:_SET_and_MYND_domain-containing_protein_4_[Papilio_polytes]
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0032259 P methylation
GO:0046872 F metal ion binding
10888 O_BomoSK19800_complete:A_BomoSK_comp14275_c0_seq1
137bp
10889 O_BomoSK19801_complete:A_BomoSK_comp14275_c0_seq1
106bp
10890 O_BomoSK19802_complete:A_BomoSK_comp14275_c0_seq2
1138bp
GO:0008270 F zinc ion binding
GO:0016874 F ligase activity
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0071600 P otic vesicle morphogenesis
GO:0071797 C LUBAC complex
GO:0097039 P protein linear polyubiquitination
previous next from show/33939

- SilkBase 1999-2023 -