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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
61 O_BomoN4EE10055_complete:A_BomoN4EE_TR28389_c0_g1_i8
262bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_Q_isoform_X5_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0090367 P negative regulation of mRNA modification
GO:1990635 C proximal dendrite
62 O_BomoN4EE10056_5prime_partial:A_BomoN4EE_TR28389_c0_g1_i8
237bp
63 O_BomoN4EE10057_3prime_partial:A_BomoN4EE_TR28389_c0_g1_i8
140bp
64 O_BomoN4EE10058_complete:A_BomoN4EE_TR28389_c0_g1_i8
118bp
 Heterogeneous_nuclear_ribonucleoprotein_R_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0010467 P gene expression
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030529 C ribonucleoprotein complex
GO:0043086 P negative regulation of catalytic activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043679 C axon terminus
GO:0044822 F RNA binding
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061157 P mRNA destabilization
GO:0071013 C catalytic step 2 spliceosome
65 O_BomoN4EE10059_complete:A_BomoN4EE_TR28389_c0_g1_i8
111bp
66 O_BomoN4EE1005_internal:A_BomoN4EE_TR13486_c0_g1_i1
135bp
67 O_BomoN4EE10060_complete:A_BomoN4EE_TR28389_c0_g1_i9
270bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R-like_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
68 O_BomoN4EE10061_complete:A_BomoN4EE_TR28389_c0_g1_i10
518bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R_isoform_X3_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
69 O_BomoN4EE10062_complete:A_BomoN4EE_TR28389_c0_g1_i11
599bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_Q_isoform_X1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
70 O_BomoN4EE10063_5prime_partial:A_BomoN4EE_TR28389_c0_g1_i11
237bp
71 O_BomoN4EE10064_3prime_partial:A_BomoN4EE_TR28389_c0_g1_i11
140bp
72 O_BomoN4EE10065_complete:A_BomoN4EE_TR28389_c0_g1_i12
270bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R-like_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
73 O_BomoN4EE10066_complete:A_BomoN4EE_TR28389_c0_g1_i13
518bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R_isoform_X3_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
74 O_BomoN4EE10067_complete:A_BomoN4EE_TR28389_c0_g1_i14
270bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R-like_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
75 O_BomoN4EE10068_complete:A_BomoN4EE_TR28389_c0_g1_i15
181bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R_isoform_X3_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0090367 P negative regulation of mRNA modification
GO:1990635 C proximal dendrite
76 O_BomoN4EE10069_complete:A_BomoN4EE_TR28389_c0_g1_i15
122bp
77 O_BomoN4EE1006_3prime_partial:A_BomoN4EE_TR13486_c0_g1_i1
124bp
 PREDICTED:_ecdysone-induced_protein_78C_[Bombyx_mori]
GO:0002165 P instar larval or pupal development
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003707 F steroid hormone receptor activity
GO:0004879 F nuclear receptor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0010906 P regulation of glucose metabolic process
GO:0030522 P intracellular receptor signaling pathway
GO:0043401 P steroid hormone mediated signaling pathway
GO:0043565 F sequence-specific DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
78 O_BomoN4EE10070_complete:A_BomoN4EE_TR28389_c0_g1_i15
118bp
 Heterogeneous_nuclear_ribonucleoprotein_R_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0010467 P gene expression
GO:0030425 C dendrite
GO:0030426 C growth cone
GO:0030529 C ribonucleoprotein complex
GO:0043086 P negative regulation of catalytic activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0043679 C axon terminus
GO:0044822 F RNA binding
GO:0061014 P positive regulation of mRNA catabolic process
GO:0061157 P mRNA destabilization
GO:0071013 C catalytic step 2 spliceosome
79 O_BomoN4EE10071_complete:A_BomoN4EE_TR28389_c0_g1_i15
111bp
80 O_BomoN4EE10072_5prime_partial:A_BomoN4EE_TR28391_c1_g1_i1
193bp
 PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_isoform_X4_[Bombyx_mori]
81 O_BomoN4EE10073_complete:A_BomoN4EE_TR28392_c0_g1_i1
117bp
82 O_BomoN4EE10074_complete:A_BomoN4EE_TR28393_c4_g1_i1
835bp
 PREDICTED:_transcription_initiation_factor_TFIID_subunit_4_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0001092 F TFIIA-class transcription factor complex binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007517 P muscle organ development
GO:0008134 F transcription factor binding
GO:0022008 P neurogenesis
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0048813 P dendrite morphogenesis
GO:0051123 P RNA polymerase II preinitiation complex assembly
83 O_BomoN4EE10075_complete:A_BomoN4EE_TR28393_c4_g3_i1
325bp
 hypothetical_protein_KGM_18963_[Danaus_plexippus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
84 O_BomoN4EE10076_complete:A_BomoN4EE_TR28393_c5_g3_i1
408bp
 PREDICTED:_synapse-associated_protein_of_47_kDa_isoform_X2_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0007268 P chemical synaptic transmission
GO:0008306 P associative learning
GO:0045202 C synapse
GO:0048172 P regulation of short-term neuronal synaptic plasticity
85 O_BomoN4EE10077_complete:A_BomoN4EE_TR28393_c5_g3_i1
173bp
86 O_BomoN4EE10078_complete:A_BomoN4EE_TR28393_c5_g3_i1
123bp
87 O_BomoN4EE10079_complete:A_BomoN4EE_TR28393_c5_g3_i1
106bp
88 O_BomoN4EE1007_5prime_partial:A_BomoN4EE_TR13487_c0_g1_i1
179bp
 PREDICTED:_epidermal_growth_factor_receptor_kinase_substrate_8-like_isoform_X3_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005089 F guanyl-nucleotide exchange factor activity
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007266 P Rho protein signal transduction
GO:0016601 P Rac protein signal transduction
GO:0030676 F guanyl-nucleotide exchange factor activity
GO:0031982 C vesicle
GO:0032587 C ruffle membrane
GO:0035023 P regulation of Rho protein signal transduction
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:1900029 P positive regulation of ruffle assembly
89 O_BomoN4EE10080_complete:A_BomoN4EE_TR28393_c5_g3_i2
387bp
 PREDICTED:_synapse-associated_protein_of_47_kDa_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0007268 P chemical synaptic transmission
GO:0008306 P associative learning
GO:0045202 C synapse
GO:0048172 P regulation of short-term neuronal synaptic plasticity
90 O_BomoN4EE10081_complete:A_BomoN4EE_TR28393_c5_g3_i2
240bp
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