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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3481 O_BomoN4EE13133_complete:A_BomoN4EE_TR30587_c0_g5_i2
144bp
 endonuclease-reverse_transcriptase_[Danaus_plexippus]
3482 O_BomoN4EE13134_complete:A_BomoN4EE_TR30587_c0_g5_i2
135bp
3483 O_BomoN4EE13135_5prime_partial:A_BomoN4EE_TR30587_c1_g1_i1
110bp
 PREDICTED:_hemicentin-1-like_[Bombyx_mori]
3484 O_BomoN4EE13136_complete:A_BomoN4EE_TR30588_c0_g1_i1
514bp
 PREDICTED:_transmembrane_protein_39A_[Amyelois_transitella]
GO:0002230 P positive regulation of defense response to virus by host
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
3485 O_BomoN4EE13137_complete:A_BomoN4EE_TR30588_c0_g1_i1
101bp
3486 O_BomoN4EE13138_complete:A_BomoN4EE_TR30588_c0_g2_i1
514bp
 PREDICTED:_transmembrane_protein_39A_[Amyelois_transitella]
GO:0002230 P positive regulation of defense response to virus by host
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
3487 O_BomoN4EE13139_complete:A_BomoN4EE_TR30588_c0_g2_i1
101bp
3488 O_BomoN4EE1313_complete:A_BomoN4EE_TR18143_c0_g1_i1
124bp
 PREDICTED:_transcription_initiation_factor_TFIID_subunit_7-like_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0008134 F transcription factor binding
GO:0035035 F histone acetyltransferase binding
GO:0044212 F transcription cis-regulatory region binding
GO:0051123 P RNA polymerase II preinitiation complex assembly
3489 O_BomoN4EE13140_complete:A_BomoN4EE_TR30588_c8_g2_i1
219bp
 PREDICTED:_conserved_oligomeric_Golgi_complex_subunit_4-like_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
3490 O_BomoN4EE13141_5prime_partial:A_BomoN4EE_TR30588_c8_g2_i1
112bp
3491 O_BomoN4EE13142_complete:A_BomoN4EE_TR30588_c8_g2_i1
111bp
3492 O_BomoN4EE13143_complete:A_BomoN4EE_TR30588_c8_g2_i2
175bp
 PREDICTED:_conserved_oligomeric_Golgi_complex_subunit_4-like_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
3493 O_BomoN4EE13144_5prime_partial:A_BomoN4EE_TR30588_c8_g2_i2
112bp
3494 O_BomoN4EE13145_complete:A_BomoN4EE_TR30588_c8_g2_i2
111bp
3495 O_BomoN4EE13146_complete:A_BomoN4EE_TR30588_c8_g2_i3
219bp
 PREDICTED:_conserved_oligomeric_Golgi_complex_subunit_4-like_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
3496 O_BomoN4EE13147_complete:A_BomoN4EE_TR30588_c8_g2_i3
111bp
3497 O_BomoN4EE13148_3prime_partial:A_BomoN4EE_TR30588_c8_g2_i4
211bp
 PREDICTED:_conserved_oligomeric_Golgi_complex_subunit_4-like_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
3498 O_BomoN4EE13149_5prime_partial:A_BomoN4EE_TR30588_c8_g2_i4
112bp
3499 O_BomoN4EE1314_complete:A_BomoN4EE_TR18143_c0_g2_i1
380bp
 PREDICTED:_transcription_initiation_factor_TFIID_subunit_7-like_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0008134 F transcription factor binding
GO:0035035 F histone acetyltransferase binding
GO:0044212 F transcription cis-regulatory region binding
GO:0051123 P RNA polymerase II preinitiation complex assembly
3500 O_BomoN4EE13150_3prime_partial:A_BomoN4EE_TR30588_c8_g2_i6
108bp
 PREDICTED:_conserved_oligomeric_Golgi_complex_subunit_4_[Papilio_xuthus]
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
3501 O_BomoN4EE13151_complete:A_BomoN4EE_TR30588_c8_g2_i7
175bp
 PREDICTED:_conserved_oligomeric_Golgi_complex_subunit_4-like_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
3502 O_BomoN4EE13152_complete:A_BomoN4EE_TR30588_c8_g2_i7
150bp
3503 O_BomoN4EE13153_3prime_partial:A_BomoN4EE_TR30588_c8_g2_i8
255bp
 PREDICTED:_conserved_oligomeric_Golgi_complex_subunit_4-like_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
3504 O_BomoN4EE13154_5prime_partial:A_BomoN4EE_TR30588_c8_g2_i8
112bp
3505 O_BomoN4EE13155_complete:A_BomoN4EE_TR30588_c8_g2_i9
175bp
 PREDICTED:_conserved_oligomeric_Golgi_complex_subunit_4-like_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
3506 O_BomoN4EE13156_complete:A_BomoN4EE_TR30588_c8_g2_i9
150bp
3507 O_BomoN4EE13157_5prime_partial:A_BomoN4EE_TR30588_c8_g2_i9
112bp
3508 O_BomoN4EE13158_complete:A_BomoN4EE_TR30588_c8_g2_i10
175bp
 PREDICTED:_conserved_oligomeric_Golgi_complex_subunit_4-like_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0003674 F molecular_function
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017119 C Golgi transport complex
GO:0048213 P Golgi vesicle prefusion complex stabilization
3509 O_BomoN4EE13159_complete:A_BomoN4EE_TR30588_c8_g2_i10
111bp
3510 O_BomoN4EE1315_internal:A_BomoN4EE_TR18164_c0_g1_i1
100bp
 transposase,_partial_[Cadra_cautella]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
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