SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/51699
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3451 O_BomoN4EE13106_5prime_partial:A_BomoN4EE_TR30584_c1_g7_i14
161bp
 PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_[Bombyx_mori]
3452 O_BomoN4EE13107_complete:A_BomoN4EE_TR30584_c1_g7_i14
141bp
3453 O_BomoN4EE13108_5prime_partial:A_BomoN4EE_TR30584_c1_g7_i15
162bp
 PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_[Bombyx_mori]
3454 O_BomoN4EE13109_complete:A_BomoN4EE_TR30584_c1_g7_i16
152bp
 RNA-dependent_DNA_polymerase_[Drosophila_melanogaster]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3455 O_BomoN4EE1310_5prime_partial:A_BomoN4EE_TR18128_c0_g2_i1
100bp
 PREDICTED:_mod(mdg4)-heS00531_isoform_X3_[Bombyx_mori]
3456 O_BomoN4EE13110_complete:A_BomoN4EE_TR30584_c1_g7_i17
659bp
 S70430_hypothetical_protein_4_-_fruit_fly_(Drosophila_melanogaster)_retrotransposon_mgd1
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3457 O_BomoN4EE13111_complete:A_BomoN4EE_TR30584_c1_g7_i17
394bp
 hypothetical_protein_KGM_21733_[Danaus_plexippus]
3458 O_BomoN4EE13112_complete:A_BomoN4EE_TR30584_c1_g7_i17
163bp
 RE36839p_[Drosophila_melanogaster]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3459 O_BomoN4EE13113_complete:A_BomoN4EE_TR30584_c1_g7_i17
146bp
 Retrovirus-related_Pol_polyprotein_from_transposon_412-like_Protein_[Tribolium_castaneum]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3460 O_BomoN4EE13114_complete:A_BomoN4EE_TR30584_c1_g7_i17
103bp
3461 O_BomoN4EE13115_5prime_partial:A_BomoN4EE_TR30585_c0_g1_i1
1247bp
 Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3462 O_BomoN4EE13116_3prime_partial:A_BomoN4EE_TR30585_c0_g1_i1
103bp
 PREDICTED:_uncharacterized_protein_LOC105424750_[Pogonomyrmex_barbatus]
3463 O_BomoN4EE13117_5prime_partial:A_BomoN4EE_TR30585_c0_g1_i2
1247bp
 Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3464 O_BomoN4EE13118_5prime_partial:A_BomoN4EE_TR30585_c0_g1_i3
158bp
 Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
3465 O_BomoN4EE13119_5prime_partial:A_BomoN4EE_TR30585_c0_g1_i4
543bp
 Retrovirus-related_Pol_polyprotein_from_transposon_TNT_1-94_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
3466 O_BomoN4EE1311_complete:A_BomoN4EE_TR18142_c0_g1_i1
198bp
 Uncharacterized_protein_OBRU01_17140_[Operophtera_brumata]
3467 O_BomoN4EE13120_complete:A_BomoN4EE_TR30585_c0_g2_i4
121bp
 hypothetical_protein_LOTGIDRAFT_176440_[Lottia_gigantea]
3468 O_BomoN4EE13121_complete:A_BomoN4EE_TR30586_c1_g3_i2
124bp
3469 O_BomoN4EE13122_5prime_partial:A_BomoN4EE_TR30586_c1_g3_i3
100bp
 PREDICTED:_uncharacterized_protein_LOC105841881_[Bombyx_mori]
3470 O_BomoN4EE13123_complete:A_BomoN4EE_TR30586_c1_g3_i7
124bp
3471 O_BomoN4EE13124_complete:A_BomoN4EE_TR30586_c1_g3_i10
124bp
3472 O_BomoN4EE13125_complete:A_BomoN4EE_TR30586_c1_g3_i11
183bp
 PREDICTED:_uncharacterized_protein_LOC105394311_[Plutella_xylostella]
3473 O_BomoN4EE13126_complete:A_BomoN4EE_TR30586_c1_g3_i11
124bp
3474 O_BomoN4EE13127_complete:A_BomoN4EE_TR30586_c1_g3_i12
236bp
 PREDICTED:_uncharacterized_protein_LOC105394311_[Plutella_xylostella]
3475 O_BomoN4EE13128_complete:A_BomoN4EE_TR30586_c1_g7_i1
324bp
 RNA-directed_RNA_polymerase_L_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0001172 P transcription, RNA-templated
GO:0003824 F catalytic activity
GO:0003968 F RNA-directed 5'-3' RNA polymerase activity
GO:0004482 F mRNA (guanine-N7-)-methyltransferase activity
GO:0005524 F ATP binding
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006397 P mRNA processing
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0019012 C virion component
GO:0032259 P methylation
GO:0036265 P RNA (guanine-N7)-methylation
GO:0042025 C host cell nucleus
3476 O_BomoN4EE13129_complete:A_BomoN4EE_TR30586_c1_g7_i1
186bp
 RNA-directed_RNA_polymerase_L_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0003968 F RNA-directed 5'-3' RNA polymerase activity
GO:0004482 F mRNA (guanine-N7-)-methyltransferase activity
GO:0005524 F ATP binding
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006397 P mRNA processing
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0032259 P methylation
GO:0036265 P RNA (guanine-N7)-methylation
GO:0039689 P negative stranded viral RNA replication
GO:0039697 P negative stranded viral RNA transcription
3477 O_BomoN4EE1312_complete:A_BomoN4EE_TR18143_c0_g1_i1
281bp
 PREDICTED:_transcription_initiation_factor_TFIID_subunit_7-like_[Bombyx_mori]
GO:0001075 F RNA polymerase II general transcription initiation factor activity
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0008134 F transcription factor binding
GO:0035035 F histone acetyltransferase binding
GO:0044212 F transcription cis-regulatory region binding
GO:0051123 P RNA polymerase II preinitiation complex assembly
3478 O_BomoN4EE13130_complete:A_BomoN4EE_TR30586_c1_g7_i1
131bp
 RNA-directed_RNA_polymerase_L_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0001172 P transcription, RNA-templated
GO:0003824 F catalytic activity
GO:0003968 F RNA-directed 5'-3' RNA polymerase activity
GO:0004482 F mRNA (guanine-N7-)-methyltransferase activity
GO:0005524 F ATP binding
GO:0006370 P 7-methylguanosine mRNA capping
GO:0006397 P mRNA processing
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0032259 P methylation
GO:0036265 P RNA (guanine-N7)-methylation
3479 O_BomoN4EE13131_internal:A_BomoN4EE_TR30587_c0_g1_i2
115bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
3480 O_BomoN4EE13132_5prime_partial:A_BomoN4EE_TR30587_c0_g5_i2
400bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
previous next from show/51699

- SilkBase 1999-2023 -