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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3271 O_BomoN4EE12945_internal:A_BomoN4EE_TR30573_c2_g1_i1
158bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]
3272 O_BomoN4EE12946_complete:A_BomoN4EE_TR30574_c1_g1_i1
759bp
 PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1_isoform_X1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3273 O_BomoN4EE12947_complete:A_BomoN4EE_TR30574_c1_g1_i1
121bp
 copia_[Lasius_niger]
3274 O_BomoN4EE12948_complete:A_BomoN4EE_TR30574_c1_g1_i1
120bp
3275 O_BomoN4EE12949_5prime_partial:A_BomoN4EE_TR30574_c1_g1_i2
170bp
 PREDICTED:_zinc_finger_protein_OZF_isoform_X4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
3276 O_BomoN4EE1294_3prime_partial:A_BomoN4EE_TR17747_c0_g1_i1
100bp
3277 O_BomoN4EE12950_3prime_partial:A_BomoN4EE_TR30574_c1_g1_i4
389bp
 PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3278 O_BomoN4EE12951_complete:A_BomoN4EE_TR30574_c1_g1_i5
443bp
 PREDICTED:_zinc_finger_protein_OZF_isoform_X4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3279 O_BomoN4EE12952_complete:A_BomoN4EE_TR30574_c1_g1_i5
326bp
 PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004190 F aspartic-type endopeptidase activity
GO:0005524 F ATP binding
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
3280 O_BomoN4EE12953_complete:A_BomoN4EE_TR30574_c1_g1_i5
121bp
 copia_[Lasius_niger]
3281 O_BomoN4EE12954_complete:A_BomoN4EE_TR30574_c1_g1_i5
120bp
3282 O_BomoN4EE12955_complete:A_BomoN4EE_TR30574_c1_g1_i5
115bp
3283 O_BomoN4EE12956_complete:A_BomoN4EE_TR30574_c1_g1_i6
443bp
 PREDICTED:_zinc_finger_protein_OZF_isoform_X4_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3284 O_BomoN4EE12957_5prime_partial:A_BomoN4EE_TR30574_c1_g1_i6
178bp
 PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3285 O_BomoN4EE12958_complete:A_BomoN4EE_TR30574_c1_g1_i6
120bp
3286 O_BomoN4EE12959_complete:A_BomoN4EE_TR30574_c1_g1_i6
115bp
3287 O_BomoN4EE1295_internal:A_BomoN4EE_TR17765_c0_g1_i1
138bp
 PREDICTED:_ankyrin_repeat_domain-containing_protein_12_[Bombyx_mori]
3288 O_BomoN4EE12960_5prime_partial:A_BomoN4EE_TR30574_c1_g1_i7
611bp
 PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3289 O_BomoN4EE12961_complete:A_BomoN4EE_TR30574_c1_g1_i7
120bp
3290 O_BomoN4EE12962_complete:A_BomoN4EE_TR30574_c1_g1_i8
759bp
 PREDICTED:_gastrula_zinc_finger_protein_XlCGF57.1_isoform_X1_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
3291 O_BomoN4EE12963_complete:A_BomoN4EE_TR30574_c1_g1_i8
121bp
 copia_[Lasius_niger]
3292 O_BomoN4EE12964_complete:A_BomoN4EE_TR30574_c1_g1_i8
120bp
3293 O_BomoN4EE12965_5prime_partial:A_BomoN4EE_TR30575_c0_g1_i2
100bp
3294 O_BomoN4EE12966_complete:A_BomoN4EE_TR30575_c0_g1_i3
103bp
 putative_helentron_5_helitron-like_transposon_replicase/helicase/endonuclease_[Danaus_plexippus]
3295 O_BomoN4EE12967_complete:A_BomoN4EE_TR30575_c0_g1_i4
111bp
3296 O_BomoN4EE12968_complete:A_BomoN4EE_TR30576_c0_g4_i1
174bp
 PREDICTED:_uncharacterized_protein_LOC106131495_isoform_X2_[Amyelois_transitella]
3297 O_BomoN4EE12969_complete:A_BomoN4EE_TR30576_c1_g1_i1
1757bp
 PREDICTED:_uncharacterized_protein_LOC101745010_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
3298 O_BomoN4EE1296_3prime_partial:A_BomoN4EE_TR17773_c0_g1_i1
104bp
3299 O_BomoN4EE12970_complete:A_BomoN4EE_TR30576_c1_g1_i1
105bp
3300 O_BomoN4EE12971_3prime_partial:A_BomoN4EE_TR30576_c1_g1_i2
509bp
 PREDICTED:_uncharacterized_protein_LOC101745010_[Bombyx_mori]
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