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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2701 O_BomoN4EE12431_complete:A_BomoN4EE_TR30102_c2_g2_i5
294bp
 PREDICTED:_DNA_repair_protein_XRCC1_isoform_X3_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0000724 P double-strand break repair via homologous recombination
GO:0001666 P response to hypoxia
GO:0003684 F damaged DNA binding
GO:0003909 F DNA ligase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006284 P base-excision repair
GO:0006288 P base-excision repair, DNA ligation
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0010033 P response to organic substance
GO:0019899 F enzyme binding
GO:0042493 P response to xenobiotic stimulus
2702 O_BomoN4EE12432_3prime_partial:A_BomoN4EE_TR30102_c2_g2_i6
442bp
 PREDICTED:_DNA_repair_protein_XRCC1_isoform_X2_[Bombyx_mori]
GO:0000012 P single strand break repair
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
2703 O_BomoN4EE12433_complete:A_BomoN4EE_TR30103_c0_g1_i1
290bp
 non-LTR_retrotransposon_CATS_[Danaus_plexippus]
2704 O_BomoN4EE12434_complete:A_BomoN4EE_TR30103_c0_g1_i1
161bp
 non-LTR_retrotransposon_CATS_[Danaus_plexippus]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
2705 O_BomoN4EE12435_complete:A_BomoN4EE_TR30103_c0_g1_i1
148bp
2706 O_BomoN4EE12436_complete:A_BomoN4EE_TR30103_c0_g1_i1
101bp
2707 O_BomoN4EE12437_complete:A_BomoN4EE_TR30103_c1_g1_i1
157bp
 PREDICTED:_transmembrane_protein_35_isoform_X2_[Papilio_xuthus]
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0031410 C cytoplasmic vesicle
2708 O_BomoN4EE12438_complete:A_BomoN4EE_TR30103_c1_g4_i1
157bp
 PREDICTED:_transmembrane_protein_35_isoform_X2_[Papilio_xuthus]
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0031410 C cytoplasmic vesicle
2709 O_BomoN4EE12439_complete:A_BomoN4EE_TR30103_c1_g5_i1
157bp
 PREDICTED:_transmembrane_protein_35_isoform_X2_[Papilio_xuthus]
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016023 C cytoplasmic vesicle
GO:0031410 C cytoplasmic vesicle
2710 O_BomoN4EE1243_internal:A_BomoN4EE_TR17215_c0_g1_i1
137bp
2711 O_BomoN4EE12440_3prime_partial:A_BomoN4EE_TR30104_c0_g1_i1
329bp
 PREDICTED:_nascent_polypeptide-associated_complex_subunit_alpha,_muscle-specific_form-like_[Bombyx_mori]
2712 O_BomoN4EE12441_complete:A_BomoN4EE_TR30104_c0_g1_i1
158bp
2713 O_BomoN4EE12442_5prime_partial:A_BomoN4EE_TR30104_c0_g1_i1
117bp
2714 O_BomoN4EE12443_3prime_partial:A_BomoN4EE_TR30104_c0_g1_i2
331bp
 PREDICTED:_nascent_polypeptide-associated_complex_subunit_alpha,_muscle-specific_form-like_[Bombyx_mori]
2715 O_BomoN4EE12444_complete:A_BomoN4EE_TR30104_c0_g1_i2
161bp
2716 O_BomoN4EE12445_5prime_partial:A_BomoN4EE_TR30104_c0_g1_i2
117bp
2717 O_BomoN4EE12446_complete:A_BomoN4EE_TR30104_c0_g1_i2
100bp
2718 O_BomoN4EE12447_5prime_partial:A_BomoN4EE_TR30105_c0_g1_i1
638bp
 PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_isoform_X1_[Bombyx_mori]
2719 O_BomoN4EE12448_5prime_partial:A_BomoN4EE_TR30105_c0_g1_i2
114bp
 PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_isoform_X1_[Bombyx_mori]
2720 O_BomoN4EE12449_complete:A_BomoN4EE_TR30105_c0_g1_i4
629bp
 PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_isoform_X4_[Bombyx_mori]
2721 O_BomoN4EE1244_internal:A_BomoN4EE_TR17223_c0_g1_i1
155bp
 PREDICTED:_uncharacterized_protein_LOC105842361_[Bombyx_mori]
GO:0001968 F fibronectin binding
GO:0002376 P immune system process
GO:0005044 F scavenger receptor activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0006898 P receptor-mediated endocytosis
GO:0006952 P defense response
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0031012 C extracellular matrix
GO:0042494 P detection of bacterial lipoprotein
GO:0043236 F laminin binding
GO:0045087 P innate immune response
GO:0050829 P defense response to Gram-negative bacterium
GO:0050830 P defense response to Gram-positive bacterium
GO:0050840 F extracellular matrix binding
GO:2000482 P regulation of interleukin-8 production
GO:2000483 P negative regulation of interleukin-8 production
2722 O_BomoN4EE12450_complete:A_BomoN4EE_TR30107_c0_g1_i1
165bp
2723 O_BomoN4EE12451_complete:A_BomoN4EE_TR30107_c0_g1_i1
137bp
 PREDICTED:_uncharacterized_protein_LOC101735858_[Bombyx_mori]
2724 O_BomoN4EE12452_5prime_partial:A_BomoN4EE_TR30108_c1_g2_i1
139bp
 PREDICTED:_uncharacterized_protein_LOC101741349_isoform_X4_[Bombyx_mori]
2725 O_BomoN4EE12453_5prime_partial:A_BomoN4EE_TR30108_c1_g3_i1
156bp
 PREDICTED:_uncharacterized_protein_LOC101741349_isoform_X5_[Bombyx_mori]
2726 O_BomoN4EE12454_5prime_partial:A_BomoN4EE_TR30108_c1_g4_i1
169bp
 PREDICTED:_uncharacterized_protein_LOC101741349_isoform_X3_[Bombyx_mori]
2727 O_BomoN4EE12455_complete:A_BomoN4EE_TR30108_c2_g1_i1
1018bp
 PREDICTED:_serine/threonine-protein_kinase_Genghis_Khan_isoform_X3_[Papilio_xuthus]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005622 C intracellular anatomical structure
GO:0006468 P protein phosphorylation
GO:0008039 P synaptic target recognition
GO:0008064 P regulation of actin polymerization or depolymerization
GO:0008154 P actin polymerization or depolymerization
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0030424 C axon
GO:0030426 C growth cone
GO:0030833 P regulation of actin filament polymerization
GO:0035556 P intracellular signal transduction
GO:0046872 F metal ion binding
2728 O_BomoN4EE12456_complete:A_BomoN4EE_TR30108_c2_g1_i1
237bp
2729 O_BomoN4EE12457_complete:A_BomoN4EE_TR30108_c2_g1_i1
168bp
2730 O_BomoN4EE12458_complete:A_BomoN4EE_TR30108_c2_g1_i1
101bp
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