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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2341 O_BomoN4EE12107_complete:A_BomoN4EE_TR30065_c0_g3_i6
479bp
 PREDICTED:_WD_repeat-containing_protein_44_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005874 C microtubule
GO:0010008 C endosome membrane
GO:0016020 C membrane
GO:0017137 F small GTPase binding
GO:0030334 P regulation of cell migration
GO:0048471 C perinuclear region of cytoplasm
2342 O_BomoN4EE12108_complete:A_BomoN4EE_TR30065_c0_g3_i6
145bp
2343 O_BomoN4EE12109_complete:A_BomoN4EE_TR30066_c0_g1_i1
220bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0000002 P mitochondrial genome maintenance
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005739 C mitochondrion
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016853 F isomerase activity
GO:0042246 P tissue regeneration
GO:0048589 P developmental growth
2344 O_BomoN4EE1210_5prime_partial:A_BomoN4EE_TR16864_c0_g1_i1
117bp
2345 O_BomoN4EE12110_complete:A_BomoN4EE_TR30066_c0_g2_i1
493bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2346 O_BomoN4EE12111_complete:A_BomoN4EE_TR30066_c0_g2_i2
303bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2347 O_BomoN4EE12112_complete:A_BomoN4EE_TR30066_c0_g2_i2
140bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2348 O_BomoN4EE12113_complete:A_BomoN4EE_TR30066_c0_g2_i3
367bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2349 O_BomoN4EE12114_complete:A_BomoN4EE_TR30066_c0_g2_i4
303bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2350 O_BomoN4EE12115_complete:A_BomoN4EE_TR30066_c0_g2_i5
611bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006260 P DNA replication
GO:0006265 P DNA topological change
GO:0007126 P meiotic cell cycle
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
GO:1901796 P regulation of signal transduction by p53 class mediator
2351 O_BomoN4EE12116_complete:A_BomoN4EE_TR30066_c0_g2_i5
367bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2352 O_BomoN4EE12117_complete:A_BomoN4EE_TR30066_c0_g2_i6
611bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006260 P DNA replication
GO:0006265 P DNA topological change
GO:0007126 P meiotic cell cycle
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
GO:1901796 P regulation of signal transduction by p53 class mediator
2353 O_BomoN4EE12118_complete:A_BomoN4EE_TR30066_c0_g2_i6
303bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2354 O_BomoN4EE12119_complete:A_BomoN4EE_TR30066_c0_g2_i7
538bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006260 P DNA replication
GO:0006265 P DNA topological change
GO:0007126 P meiotic cell cycle
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
GO:1901796 P regulation of signal transduction by p53 class mediator
2355 O_BomoN4EE1211_3prime_partial:A_BomoN4EE_TR16872_c0_g1_i1
111bp
2356 O_BomoN4EE12120_complete:A_BomoN4EE_TR30066_c0_g2_i8
615bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0000731 P DNA synthesis involved in DNA repair
GO:0000732 P strand displacement
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006260 P DNA replication
GO:0006265 P DNA topological change
GO:0007126 P meiotic cell cycle
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
GO:1901796 P regulation of signal transduction by p53 class mediator
2357 O_BomoN4EE12121_complete:A_BomoN4EE_TR30066_c0_g2_i8
367bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2358 O_BomoN4EE12122_complete:A_BomoN4EE_TR30066_c0_g2_i9
367bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2359 O_BomoN4EE12123_complete:A_BomoN4EE_TR30066_c0_g2_i10
664bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2360 O_BomoN4EE12124_complete:A_BomoN4EE_TR30066_c0_g2_i10
303bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2361 O_BomoN4EE12125_complete:A_BomoN4EE_TR30066_c0_g2_i11
1017bp
 PREDICTED:_DNA_topoisomerase_3-alpha_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003916 F DNA topoisomerase activity
GO:0003917 F DNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006265 P DNA topological change
GO:0008270 F zinc ion binding
GO:0016605 C PML body
GO:0016853 F isomerase activity
GO:0046872 F metal ion binding
2362 O_BomoN4EE12126_complete:A_BomoN4EE_TR30067_c0_g1_i1
589bp
 PREDICTED:_calcium/calmodulin-dependent_3',5'-cyclic_nucleotide_phosphodiesterase_1A_[Papilio_polytes]
GO:0004114 F 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0004115 F 3',5'-cyclic-AMP phosphodiesterase activity
GO:0004117 F calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
GO:0005516 F calmodulin binding
GO:0006198 P cAMP catabolic process
GO:0007165 P signal transduction
GO:0007608 P sensory perception of smell
GO:0008081 F phosphoric diester hydrolase activity
GO:0016787 F hydrolase activity
GO:0030552 F cAMP binding
GO:0043025 C neuronal cell body
GO:0046069 P cGMP catabolic process
GO:0046676 P negative regulation of insulin secretion
GO:0046872 F metal ion binding
GO:0048101 F calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity
GO:0050896 P response to stimulus
GO:0051592 P response to calcium ion
2363 O_BomoN4EE12127_complete:A_BomoN4EE_TR30067_c0_g1_i1
149bp
2364 O_BomoN4EE12128_complete:A_BomoN4EE_TR30067_c0_g1_i2
355bp
 PREDICTED:_calcium/calmodulin-dependent_3',5'-cyclic_nucleotide_phosphodiesterase_1A_isoform_X3_[Bombyx_mori]
GO:0004114 F 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0004117 F calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0007165 P signal transduction
GO:0008081 F phosphoric diester hydrolase activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0048101 F calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity
2365 O_BomoN4EE12129_complete:A_BomoN4EE_TR30067_c0_g1_i2
149bp
2366 O_BomoN4EE1212_complete:A_BomoN4EE_TR16872_c0_g1_i1
111bp
2367 O_BomoN4EE12130_complete:A_BomoN4EE_TR30067_c0_g1_i3
375bp
 PREDICTED:_calcium/calmodulin-dependent_3',5'-cyclic_nucleotide_phosphodiesterase_1A_isoform_X3_[Bombyx_mori]
GO:0004114 F 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0004117 F calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0007165 P signal transduction
GO:0008081 F phosphoric diester hydrolase activity
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0048101 F calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity
2368 O_BomoN4EE12131_complete:A_BomoN4EE_TR30067_c0_g1_i3
218bp
2369 O_BomoN4EE12132_complete:A_BomoN4EE_TR30067_c0_g1_i4
624bp
 PREDICTED:_calcium/calmodulin-dependent_3',5'-cyclic_nucleotide_phosphodiesterase_1A_isoform_X3_[Bombyx_mori]
GO:0004114 F 3',5'-cyclic-nucleotide phosphodiesterase activity
GO:0004115 F 3',5'-cyclic-AMP phosphodiesterase activity
GO:0004117 F calmodulin-dependent cyclic-nucleotide phosphodiesterase activity
GO:0005516 F calmodulin binding
GO:0006198 P cAMP catabolic process
GO:0007165 P signal transduction
GO:0007608 P sensory perception of smell
GO:0008081 F phosphoric diester hydrolase activity
GO:0016787 F hydrolase activity
GO:0030552 F cAMP binding
GO:0043025 C neuronal cell body
GO:0046069 P cGMP catabolic process
GO:0046676 P negative regulation of insulin secretion
GO:0046872 F metal ion binding
GO:0048101 F calcium- and calmodulin-regulated 3',5'-cyclic-GMP phosphodiesterase activity
GO:0050896 P response to stimulus
GO:0051592 P response to calcium ion
2370 O_BomoN4EE12133_complete:A_BomoN4EE_TR30067_c0_g1_i4
218bp
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