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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
2011 O_BomoN4EE11810_5prime_partial:A_BomoN4EE_TR30046_c0_g4_i3
202bp
 PREDICTED:_DNA-binding_protein_Ets97D_isoform_X1_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006541 P glutamine metabolic process
GO:0007005 P mitochondrion organization
GO:0009267 P cellular response to starvation
GO:0010821 P regulation of mitochondrion organization
GO:0010906 P regulation of glucose metabolic process
GO:0043565 F sequence-specific DNA binding
GO:0045451 P pole plasm oskar mRNA localization
2012 O_BomoN4EE11811_3prime_partial:A_BomoN4EE_TR30046_c0_g4_i4
236bp
 PREDICTED:_DNA-binding_protein_Ets97D_isoform_X3_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006541 P glutamine metabolic process
GO:0007005 P mitochondrion organization
GO:0009267 P cellular response to starvation
GO:0010821 P regulation of mitochondrion organization
GO:0010906 P regulation of glucose metabolic process
GO:0043565 F sequence-specific DNA binding
GO:0045451 P pole plasm oskar mRNA localization
2013 O_BomoN4EE11812_5prime_partial:A_BomoN4EE_TR30046_c0_g4_i4
142bp
 PREDICTED:_DNA-binding_protein_Ets97D_isoform_X1_[Bombyx_mori]
2014 O_BomoN4EE11813_3prime_partial:A_BomoN4EE_TR30047_c0_g1_i1
107bp
2015 O_BomoN4EE11814_complete:A_BomoN4EE_TR30047_c0_g2_i1
120bp
2016 O_BomoN4EE11815_complete:A_BomoN4EE_TR30047_c1_g1_i1
1297bp
 PREDICTED:_uncharacterized_protein_LOC101740438_isoform_X3_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008150 P biological_process
2017 O_BomoN4EE11816_complete:A_BomoN4EE_TR30047_c1_g1_i1
270bp
2018 O_BomoN4EE11817_complete:A_BomoN4EE_TR30047_c1_g1_i2
1301bp
 PREDICTED:_uncharacterized_protein_LOC101740438_isoform_X2_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008150 P biological_process
2019 O_BomoN4EE11818_complete:A_BomoN4EE_TR30047_c1_g1_i2
270bp
2020 O_BomoN4EE11819_complete:A_BomoN4EE_TR30047_c1_g1_i3
1297bp
 PREDICTED:_uncharacterized_protein_LOC101740438_isoform_X3_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008150 P biological_process
2021 O_BomoN4EE1181_complete:A_BomoN4EE_TR16343_c0_g1_i1
506bp
 PREDICTED:_60S_ribosomal_export_protein_NMD3_[Amyelois_transitella]
GO:0000055 P ribosomal large subunit export from nucleus
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030674 F protein-macromolecule adaptor activity
GO:0043023 F ribosomal large subunit binding
GO:0044822 F RNA binding
2022 O_BomoN4EE11820_complete:A_BomoN4EE_TR30047_c1_g1_i3
270bp
2023 O_BomoN4EE11821_complete:A_BomoN4EE_TR30047_c1_g1_i4
1357bp
 PREDICTED:_uncharacterized_protein_LOC101740438_isoform_X1_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008150 P biological_process
2024 O_BomoN4EE11822_complete:A_BomoN4EE_TR30047_c1_g1_i4
270bp
2025 O_BomoN4EE11823_complete:A_BomoN4EE_TR30047_c1_g1_i5
1357bp
 PREDICTED:_uncharacterized_protein_LOC101740438_isoform_X2_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008150 P biological_process
2026 O_BomoN4EE11824_complete:A_BomoN4EE_TR30047_c1_g1_i5
270bp
2027 O_BomoN4EE11825_complete:A_BomoN4EE_TR30047_c1_g1_i6
1301bp
 PREDICTED:_uncharacterized_protein_LOC101740438_isoform_X4_[Bombyx_mori]
GO:0005575 C cellular_component
GO:0008150 P biological_process
2028 O_BomoN4EE11826_complete:A_BomoN4EE_TR30047_c1_g1_i6
270bp
2029 O_BomoN4EE11827_complete:A_BomoN4EE_TR30048_c0_g1_i2
347bp
 PREDICTED:_uncharacterized_protein_LOC106131151_[Amyelois_transitella]
2030 O_BomoN4EE11828_complete:A_BomoN4EE_TR30048_c1_g1_i1
185bp
 PREDICTED:_zinc_finger_protein_569-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
2031 O_BomoN4EE11829_complete:A_BomoN4EE_TR30048_c1_g1_i2
731bp
 PREDICTED:_zinc_finger_protein_677-like_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
2032 O_BomoN4EE1182_complete:A_BomoN4EE_TR16343_c0_g1_i1
103bp
2033 O_BomoN4EE11830_complete:A_BomoN4EE_TR30048_c1_g1_i3
116bp
 PREDICTED:_zinc_finger_protein_569-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
2034 O_BomoN4EE11831_complete:A_BomoN4EE_TR30048_c1_g1_i4
600bp
 PREDICTED:_zinc_finger_protein_569-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
2035 O_BomoN4EE11832_complete:A_BomoN4EE_TR30048_c1_g1_i4
127bp
 PREDICTED:_zinc_finger_protein_677-like_isoform_X1_[Bombyx_mori]
2036 O_BomoN4EE11833_complete:A_BomoN4EE_TR30049_c0_g1_i1
475bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
2037 O_BomoN4EE11834_5prime_partial:A_BomoN4EE_TR30049_c0_g1_i1
259bp
 PREDICTED:_uncharacterized_protein_LOC106110672,_partial_[Papilio_polytes]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
2038 O_BomoN4EE11835_complete:A_BomoN4EE_TR30049_c0_g1_i3
456bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
2039 O_BomoN4EE11836_5prime_partial:A_BomoN4EE_TR30049_c0_g1_i3
259bp
 PREDICTED:_uncharacterized_protein_LOC106110672,_partial_[Papilio_polytes]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
2040 O_BomoN4EE11837_internal:A_BomoN4EE_TR30050_c0_g1_i1
162bp
 transposase_[Attacus_atlas]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
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