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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1711 O_BomoN4EE11540_complete:A_BomoN4EE_TR29529_c0_g1_i2
177bp
 PREDICTED:_cysteine_and_histidine-rich_protein_1_homolog_[Papilio_xuthus]
GO:0005515 F protein binding
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
1712 O_BomoN4EE11541_complete:A_BomoN4EE_TR29529_c0_g1_i3
275bp
 PREDICTED:_cysteine_and_histidine-rich_protein_1_homolog_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0004842 F ubiquitin-protein transferase activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0046872 F metal ion binding
1713 O_BomoN4EE11542_complete:A_BomoN4EE_TR29529_c0_g1_i4
177bp
 PREDICTED:_cysteine_and_histidine-rich_protein_1_homolog_[Papilio_xuthus]
GO:0005515 F protein binding
GO:0005635 C nuclear envelope
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
1714 O_BomoN4EE11543_complete:A_BomoN4EE_TR29529_c0_g1_i4
116bp
 PREDICTED:_cysteine_and_histidine-rich_protein_1_homolog_isoform_X4_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0004842 F ubiquitin-protein transferase activity
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0046872 F metal ion binding
1715 O_BomoN4EE11544_complete:A_BomoN4EE_TR29530_c0_g1_i1
206bp
 PREDICTED:_rRNA-processing_protein_FCF1_homolog_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
1716 O_BomoN4EE11545_complete:A_BomoN4EE_TR29530_c0_g3_i1
206bp
 PREDICTED:_rRNA-processing_protein_FCF1_homolog_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
1717 O_BomoN4EE11546_3prime_partial:A_BomoN4EE_TR29532_c0_g1_i1
219bp
 ligatin_[Danaus_plexippus]
GO:0001731 P formation of translation preinitiation complex
GO:0002192 P IRES-dependent translational initiation of linear mRNA
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0022627 C cytosolic small ribosomal subunit
GO:0032790 P ribosome disassembly
1718 O_BomoN4EE11547_complete:A_BomoN4EE_TR29532_c0_g1_i1
108bp
 PREDICTED:_eukaryotic_translation_initiation_factor_2D-like,_partial_[Amyelois_transitella]
GO:0001731 P formation of translation preinitiation complex
GO:0002192 P IRES-dependent translational initiation of linear mRNA
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0022627 C cytosolic small ribosomal subunit
GO:0032790 P ribosome disassembly
1719 O_BomoN4EE11548_complete:A_BomoN4EE_TR29532_c0_g1_i2
108bp
 PREDICTED:_eukaryotic_translation_initiation_factor_2D-like,_partial_[Amyelois_transitella]
GO:0001731 P formation of translation preinitiation complex
GO:0002192 P IRES-dependent translational initiation of linear mRNA
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0022627 C cytosolic small ribosomal subunit
GO:0032790 P ribosome disassembly
1720 O_BomoN4EE11549_3prime_partial:A_BomoN4EE_TR29532_c0_g1_i3
376bp
 ligatin_[Danaus_plexippus]
GO:0001731 P formation of translation preinitiation complex
GO:0002192 P IRES-dependent translational initiation of linear mRNA
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0022627 C cytosolic small ribosomal subunit
GO:0032790 P ribosome disassembly
1721 O_BomoN4EE1154_3prime_partial:A_BomoN4EE_TR16248_c0_g1_i1
164bp
 PREDICTED:_ethanolaminephosphotransferase_1_[Amyelois_transitella]
GO:0004307 F ethanolaminephosphotransferase activity
GO:0005575 C cellular_component
GO:0006629 P lipid metabolic process
GO:0006646 P phosphatidylethanolamine biosynthetic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
GO:0046872 F metal ion binding
GO:1903955 P positive regulation of protein targeting to mitochondrion
1722 O_BomoN4EE11550_complete:A_BomoN4EE_TR29532_c0_g1_i3
140bp
1723 O_BomoN4EE11551_3prime_partial:A_BomoN4EE_TR29532_c0_g1_i4
210bp
 ligatin_[Danaus_plexippus]
GO:0001731 P formation of translation preinitiation complex
GO:0002192 P IRES-dependent translational initiation of linear mRNA
GO:0003723 F RNA binding
GO:0003743 F translation initiation factor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0022627 C cytosolic small ribosomal subunit
GO:0032790 P ribosome disassembly
1724 O_BomoN4EE11552_complete:A_BomoN4EE_TR29533_c0_g1_i1
461bp
 PREDICTED:_ATP-dependent_RNA_helicase_DDX18-like_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
1725 O_BomoN4EE11553_complete:A_BomoN4EE_TR29533_c0_g1_i2
216bp
 PREDICTED:_ATP-dependent_RNA_helicase_DDX18-like_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008283 P cell population proliferation
GO:0010501 P RNA secondary structure unwinding
GO:0016049 P cell growth
GO:0016787 F hydrolase activity
GO:0019233 P sensory perception of pain
1726 O_BomoN4EE11554_complete:A_BomoN4EE_TR29533_c0_g1_i2
199bp
 PREDICTED:_ATP-dependent_RNA_helicase_DDX18-like_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
1727 O_BomoN4EE11555_complete:A_BomoN4EE_TR29533_c0_g1_i3
468bp
 PREDICTED:_ATP-dependent_RNA_helicase_DDX18-like_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008283 P cell population proliferation
GO:0010501 P RNA secondary structure unwinding
GO:0016049 P cell growth
GO:0016787 F hydrolase activity
GO:0019233 P sensory perception of pain
1728 O_BomoN4EE11556_complete:A_BomoN4EE_TR29533_c0_g1_i4
223bp
 PREDICTED:_ATP-dependent_RNA_helicase_DDX18-like_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008283 P cell population proliferation
GO:0010501 P RNA secondary structure unwinding
GO:0016049 P cell growth
GO:0016787 F hydrolase activity
GO:0019233 P sensory perception of pain
1729 O_BomoN4EE11557_complete:A_BomoN4EE_TR29533_c0_g1_i4
199bp
 PREDICTED:_ATP-dependent_RNA_helicase_DDX18-like_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0010501 P RNA secondary structure unwinding
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
1730 O_BomoN4EE11558_3prime_partial:A_BomoN4EE_TR29534_c0_g1_i1
122bp
 hypothetical_protein_RR48_10943_[Papilio_machaon]
1731 O_BomoN4EE11559_complete:A_BomoN4EE_TR29534_c0_g1_i1
106bp
1732 O_BomoN4EE1155_complete:A_BomoN4EE_TR16251_c0_g1_i1
266bp
 PREDICTED:_monocyte_to_macrophage_differentiation_factor_isoform_X1_[Papilio_machaon]
GO:0000139 C Golgi membrane
GO:0004672 F protein kinase activity
GO:0005794 C Golgi apparatus
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019835 P cytolysis
GO:0032880 P regulation of protein localization
GO:0045666 P positive regulation of neuron differentiation
GO:0045860 P positive regulation of protein kinase activity
GO:0046579 P positive regulation of Ras protein signal transduction
GO:0048471 C perinuclear region of cytoplasm
1733 O_BomoN4EE11560_complete:A_BomoN4EE_TR29534_c0_g2_i1
946bp
 PREDICTED:_serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_delta-like_isoform_X2_[Bombyx_mori]
GO:0000159 C protein phosphatase type 2A complex
GO:0004721 F phosphoprotein phosphatase activity
GO:0004722 F protein serine/threonine phosphatase activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006470 P protein dephosphorylation
GO:0007050 P regulation of cell cycle
GO:0008601 F protein phosphatase regulator activity
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0046872 F metal ion binding
1734 O_BomoN4EE11561_complete:A_BomoN4EE_TR29534_c0_g2_i1
140bp
1735 O_BomoN4EE11562_complete:A_BomoN4EE_TR29534_c0_g2_i1
106bp
1736 O_BomoN4EE11563_5prime_partial:A_BomoN4EE_TR29536_c0_g1_i2
100bp
 hypothetical_protein_KGM_05399_[Danaus_plexippus]
1737 O_BomoN4EE11564_complete:A_BomoN4EE_TR29538_c0_g1_i1
316bp
 PREDICTED:_NADPH-dependent_diflavin_oxidoreductase_1_[Amyelois_transitella]
GO:0003958 F NADPH-hemoprotein reductase activity
GO:0005506 F iron ion binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008219 P cell death
GO:0010181 F FMN binding
GO:0016226 P iron-sulfur cluster assembly
GO:0016491 F oxidoreductase activity
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0036245 P cellular response to menadione
GO:0048471 C perinuclear region of cytoplasm
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0055114 P obsolete oxidation-reduction process
1738 O_BomoN4EE11565_complete:A_BomoN4EE_TR29538_c0_g1_i1
234bp
 U3_small_nucleolar_ribonucleoprotein_IMP4_[Papilio_xuthus]
GO:0003958 F NADPH-hemoprotein reductase activity
GO:0005506 F iron ion binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008219 P cell death
GO:0010181 F FMN binding
GO:0016226 P iron-sulfur cluster assembly
GO:0016491 F oxidoreductase activity
GO:0016651 F oxidoreductase activity, acting on NAD(P)H
GO:0036245 P cellular response to menadione
GO:0048471 C perinuclear region of cytoplasm
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0055114 P obsolete oxidation-reduction process
1739 O_BomoN4EE11566_complete:A_BomoN4EE_TR29538_c0_g1_i1
159bp
1740 O_BomoN4EE11567_complete:A_BomoN4EE_TR29538_c0_g1_i1
105bp
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