SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9991 O_BomoMG27378_3prime_partial:A_BomoMG_comp54334_c0_seq1
151bp
GO:0005070 F obsolete SH3/SH2 adaptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006914 P autophagy
GO:0007165 P signal transduction
GO:0009967 P positive regulation of signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016197 P endosomal transport
GO:0031901 C early endosome membrane
GO:0033565 C ESCRT-0 complex
GO:0036258 P multivesicular body assembly
GO:0042059 P negative regulation of epidermal growth factor receptor signaling pathway
GO:1903543 P positive regulation of exosomal secretion
GO:1903551 P regulation of extracellular exosome assembly
9992 O_BomoMG27380_complete:A_BomoMG_comp54386_c0_seq1
842bp
GO:0004645 F 1,4-alpha-oligoglucan phosphorylase activity
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0005977 P glycogen metabolic process
GO:0005980 P glycogen catabolic process
GO:0008184 F glycogen phosphorylase activity
GO:0008340 P determination of adult lifespan
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0030170 F pyridoxal phosphate binding
GO:0042803 F protein homodimerization activity
GO:0043234 C protein-containing complex
GO:0045819 P positive regulation of glycogen catabolic process
GO:0045824 P negative regulation of innate immune response
GO:0050829 P defense response to Gram-negative bacterium
GO:0060361 P flight
9993 O_BomoMG27384_complete:A_BomoMG_comp54397_c0_seq1
286bp
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016032 P viral process
GO:1903071 P positive regulation of ER-associated ubiquitin-dependent protein catabolic process
GO:1904288 F BAT3 complex binding
9994 O_BomoMG27386_complete:A_BomoMG_comp54412_c0_seq1
311bp
GO:0000022 P mitotic spindle elongation
GO:0000049 F tRNA binding
GO:0001677 P formation of translation initiation ternary complex
GO:0003743 F translation initiation factor activity
GO:0005525 F GTP binding
GO:0005829 C cytosol
GO:0005850 C eukaryotic translation initiation factor 2 complex
GO:0005875 C microtubule associated complex
GO:0006412 P translation
GO:0006413 P translational initiation
GO:0007052 P mitotic spindle organization
GO:0016199 P axon midline choice point recognition
GO:0034976 P response to endoplasmic reticulum stress
GO:0046872 F metal ion binding
9995 O_BomoMG27389_complete:A_BomoMG_comp54615_c0_seq1
233bp
GO:0000502 C proteasome complex
GO:0004175 F endopeptidase activity
GO:0004298 F threonine-type endopeptidase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005839 C proteasome core complex
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0016787 F hydrolase activity
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051603 P proteolysis involved in cellular protein catabolic process
9996 O_BomoMG2738_5prime_partial:A_BomoMG_comp22279_c0_seq1
126bp
 PREDICTED:_E3_ubiquitin-protein_ligase_SMURF2_isoform_X2_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0001700 P embryonic development via the syncytial blastoderm
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007293 P germarium-derived egg chamber formation
GO:0008101 P BMP signaling pathway
GO:0010629 P negative regulation of gene expression
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030514 P negative regulation of BMP signaling pathway
GO:0040008 P regulation of growth
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0048619 P embryonic hindgut morphogenesis
9997 O_BomoMG27391_complete:A_BomoMG_comp54846_c0_seq1
113bp
9998 O_BomoMG27392_complete:A_BomoMG_comp55038_c0_seq1
300bp
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005743 C mitochondrial inner membrane
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007005 P mitochondrion organization
GO:0007062 P sister chromatid cohesion
GO:0008022 F protein C-terminus binding
GO:0008150 P biological_process
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016363 C nuclear matrix
GO:0031536 P positive regulation of exit from mitosis
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0033218 F amide binding
GO:0033600 P negative regulation of mammary gland epithelial cell proliferation
GO:0043066 P negative regulation of apoptotic process
GO:0043234 C protein-containing complex
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0047485 F protein N-terminus binding
GO:0050821 P protein stabilization
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060744 P mammary gland branching involved in thelarche
GO:0060749 P mammary gland alveolus development
GO:0060762 P regulation of branching involved in mammary gland duct morphogenesis
GO:0070062 C extracellular exosome
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0071944 C cell periphery
GO:1902808 P positive regulation of cell cycle G1/S phase transition
9999 O_BomoMG27393_complete:A_BomoMG_comp55079_c0_seq1
192bp
GO:0000166 F nucleotide binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0005912 C adherens junction
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030054 C cell junction
10000 O_BomoMG27394_5prime_partial:A_BomoMG_comp55203_c0_seq1
291bp
GO:0000139 C Golgi membrane
GO:0005515 F protein binding
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005795 C Golgi stack
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0008565 F obsolete protein transporter activity
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030133 C transport vesicle
GO:0044822 F RNA binding
GO:0045056 P transcytosis
GO:0048193 P Golgi vesicle transport
GO:0048208 P COPII vesicle coating
GO:0048211 P Golgi vesicle docking
GO:0048280 P vesicle fusion with Golgi apparatus
GO:0048471 C perinuclear region of cytoplasm
GO:0061025 P membrane fusion
10001 O_BomoMG27396_internal:A_BomoMG_comp55226_c0_seq1
151bp
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005543 F phospholipid binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006897 P endocytosis
GO:0006915 P apoptotic process
GO:0006919 P activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0030136 C clathrin-coated vesicle
GO:0030154 P cell differentiation
GO:0030276 F clathrin binding
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:0042981 P regulation of apoptotic process
GO:0043231 C intracellular membrane-bounded organelle
GO:0048260 P positive regulation of receptor-mediated endocytosis
GO:0048268 P clathrin coat assembly
GO:0072583 P clathrin-dependent endocytosis
GO:0097190 P apoptotic signaling pathway
10002 O_BomoMG27398_complete:A_BomoMG_comp55284_c0_seq1
151bp
GO:0004364 F glutathione transferase activity
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016740 F transferase activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0070207 P protein homotrimerization
10003 O_BomoMG27399_complete:A_BomoMG_comp55361_c0_seq1
424bp
GO:0003824 F catalytic activity
GO:0004334 F fumarylacetoacetase activity
GO:0006559 P L-phenylalanine catabolic process
GO:0006572 P tyrosine catabolic process
GO:0008152 P metabolic process
GO:0009072 P aromatic amino acid family metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
10004 O_BomoMG273_internal:A_BomoMG_comp17589_c0_seq1
183bp
 PREDICTED:_uncharacterized_protein_LOC101737722_[Bombyx_mori]
10005 O_BomoMG27400_complete:A_BomoMG_comp55436_c0_seq1
304bp
10006 O_BomoMG27401_complete:A_BomoMG_comp55444_c0_seq1
522bp
GO:0016020 C membrane
GO:0016021 C integral component of membrane
10007 O_BomoMG27406_complete:A_BomoMG_comp55731_c0_seq1
532bp
GO:0000139 C Golgi membrane
GO:0003824 F catalytic activity
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006629 P lipid metabolic process
GO:0006694 P steroid biosynthetic process
GO:0006695 P cholesterol biosynthetic process
GO:0006979 P response to oxidative stress
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0009888 P tissue development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016126 P sterol biosynthetic process
GO:0016491 F oxidoreductase activity
GO:0016614 F oxidoreductase activity, acting on CH-OH group of donors
GO:0019899 F enzyme binding
GO:0042605 F peptide antigen binding
GO:0043066 P negative regulation of apoptotic process
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043588 P skin development
GO:0050614 F delta24-sterol reductase activity
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
10008 O_BomoMG27408_3prime_partial:A_BomoMG_comp55818_c0_seq1
283bp
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005938 C cell cortex
GO:0007368 P determination of left/right symmetry
GO:0007498 P mesoderm development
GO:0008152 P metabolic process
GO:0016459 C myosin complex
GO:0042623 F ATP hydrolysis activity
GO:0048803 P imaginal disc-derived male genitalia morphogenesis
GO:0071907 P determination of digestive tract left/right asymmetry
10009 O_BomoMG27409_complete:A_BomoMG_comp55893_c0_seq1
314bp
GO:0000776 C kinetochore
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0012507 C ER to Golgi transport vesicle membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0031080 C nuclear pore outer ring
GO:0031410 C cytoplasmic vesicle
GO:0032008 P positive regulation of TOR signaling
GO:0043231 C intracellular membrane-bounded organelle
GO:0051028 P mRNA transport
GO:0061700 C GATOR2 complex
GO:0070062 C extracellular exosome
10010 O_BomoMG2740_3prime_partial:A_BomoMG_comp22281_c0_seq1
434bp
 PREDICTED:_uncharacterized_protein_C18orf8_[Bombyx_mori]
GO:0005765 C lysosomal membrane
10011 O_BomoMG27411_complete:A_BomoMG_comp56012_c0_seq1
263bp
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0033897 F ribonuclease T2 activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
10012 O_BomoMG27412_5prime_partial:A_BomoMG_comp56046_c0_seq1
558bp
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
10013 O_BomoMG27413_3prime_partial:A_BomoMG_comp56092_c0_seq1
396bp
10014 O_BomoMG27415_complete:A_BomoMG_comp56149_c0_seq1
1001bp
GO:0032403 F protein-containing complex binding
10015 O_BomoMG27416_3prime_partial:A_BomoMG_comp56152_c0_seq1
471bp
GO:0000139 C Golgi membrane
GO:0000902 P cell morphogenesis
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0006909 P phagocytosis
GO:0010883 P regulation of lipid storage
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030126 C COPI vesicle coat
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045089 P positive regulation of innate immune response
GO:0050829 P defense response to Gram-negative bacterium
10016 O_BomoMG27417_5prime_partial:A_BomoMG_comp56152_c0_seq1
303bp
10017 O_BomoMG27419_complete:A_BomoMG_comp56205_c0_seq1
800bp
GO:0004601 F peroxidase activity
GO:0005506 F iron ion binding
GO:0005576 C extracellular region
GO:0006909 P phagocytosis
GO:0006979 P response to oxidative stress
GO:0007306 P eggshell chorion assembly
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0022008 P neurogenesis
GO:0042600 C egg chorion
GO:0042744 P hydrogen peroxide catabolic process
GO:0045471 P response to ethanol
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
10018 O_BomoMG2741_complete:A_BomoMG_comp22284_c0_seq1
258bp
 PREDICTED:_phospholipid_scramblase_2_isoform_X1_[Papilio_xuthus]
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017121 P plasma membrane phospholipid scrambling
GO:0017128 F phospholipid scramblase activity
GO:0046872 F metal ion binding
10019 O_BomoMG27423_complete:A_BomoMG_comp56206_c0_seq1
996bp
GO:0000502 C proteasome complex
GO:0004175 F endopeptidase activity
GO:0005634 C nucleus
GO:0005838 C proteasome regulatory particle
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0008540 C proteasome regulatory particle, base subcomplex
GO:0030234 F enzyme regulator activity
GO:0034515 C proteasome storage granule
GO:0042176 P regulation of protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0050790 P regulation of catalytic activity
10020 O_BomoMG27424_complete:A_BomoMG_comp56243_c0_seq1
217bp
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0009306 P protein secretion
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0030173 C integral component of Golgi membrane
previous next from show/16985

- SilkBase 1999-2023 -