SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8791 O_BomoMG25256_complete:A_BomoMG_comp41109_c3_seq24
136bp
8792 O_BomoMG25257_complete:A_BomoMG_comp41109_c3_seq25
1064bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8793 O_BomoMG25258_complete:A_BomoMG_comp41109_c3_seq25
751bp
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
8794 O_BomoMG25259_5prime_partial:A_BomoMG_comp41109_c3_seq25
586bp
8795 O_BomoMG25267_complete:A_BomoMG_comp41109_c3_seq27
751bp
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
8796 O_BomoMG25268_5prime_partial:A_BomoMG_comp41109_c3_seq28
289bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8797 O_BomoMG25270_complete:A_BomoMG_comp41109_c3_seq29
751bp
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
8798 O_BomoMG25271_5prime_partial:A_BomoMG_comp41109_c3_seq30
218bp
8799 O_BomoMG25272_5prime_partial:A_BomoMG_comp41109_c3_seq30
100bp
8800 O_BomoMG25273_5prime_partial:A_BomoMG_comp41110_c2_seq1
157bp
8801 O_BomoMG25278_internal:A_BomoMG_comp41110_c2_seq5
115bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8802 O_BomoMG25281_5prime_partial:A_BomoMG_comp41110_c2_seq7
156bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8803 O_BomoMG25284_internal:A_BomoMG_comp41110_c2_seq8
116bp
8804 O_BomoMG25285_5prime_partial:A_BomoMG_comp41110_c2_seq9
266bp
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
8805 O_BomoMG25287_3prime_partial:A_BomoMG_comp41110_c2_seq9
210bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8806 O_BomoMG25288_5prime_partial:A_BomoMG_comp41110_c2_seq10
266bp
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0006313 P transposition, DNA-mediated
GO:0008270 F zinc ion binding
GO:0019012 C virion component
GO:0019013 C viral nucleocapsid
GO:0046872 F metal ion binding
8807 O_BomoMG2528_3prime_partial:A_BomoMG_comp21934_c0_seq2
650bp
 PREDICTED:_long-chain-fatty-acid--CoA_ligase_4_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001676 P long-chain fatty acid metabolic process
GO:0003824 F catalytic activity
GO:0004467 F long-chain fatty acid-CoA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005741 C mitochondrial outer membrane
GO:0005777 C peroxisome
GO:0005778 C peroxisomal membrane
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005811 C lipid droplet
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006641 P triglyceride metabolic process
GO:0007584 P response to nutrient
GO:0008152 P metabolic process
GO:0008610 P lipid biosynthetic process
GO:0015908 P fatty acid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016874 F ligase activity
GO:0030182 P neuron differentiation
GO:0030307 P positive regulation of cell growth
GO:0031090 C organelle membrane
GO:0031957 F very long-chain fatty acid-CoA ligase activity
GO:0031966 C mitochondrial membrane
GO:0032307 P negative regulation of prostaglandin secretion
GO:0035338 P long-chain fatty-acyl-CoA biosynthetic process
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044233 C mitochondria-associated endoplasmic reticulum membrane
GO:0047676 F arachidonate-CoA ligase activity
GO:0060136 P embryonic process involved in female pregnancy
GO:0060996 P dendritic spine development
GO:0070062 C extracellular exosome
GO:0070672 P response to interleukin-15
8808 O_BomoMG25298_5prime_partial:A_BomoMG_comp41111_c0_seq1
126bp
8809 O_BomoMG25300_complete:A_BomoMG_comp41111_c7_seq6
286bp
GO:0000139 C Golgi membrane
GO:0000281 P mitotic cytokinesis
GO:0000301 P retrograde transport, vesicle recycling within Golgi
GO:0000915 P actomyosin contractile ring assembly
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0007030 P Golgi organization
GO:0007053 P spindle assembly involved in male meiosis
GO:0007110 P meiosis I cytokinesis
GO:0007111 P meiosis II cytokinesis
GO:0007112 P male meiosis cytokinesis
GO:0007224 P smoothened signaling pathway
GO:0008289 F lipid binding
GO:0010314 F phosphatidylinositol-5-phosphate binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0017137 F small GTPase binding
GO:0031410 C cytoplasmic vesicle
GO:0031985 C Golgi cisterna
GO:0032154 C cleavage furrow
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0036089 P cleavage furrow formation
GO:0048193 P Golgi vesicle transport
GO:0051225 P spindle assembly
GO:0070273 F phosphatidylinositol-4-phosphate binding
GO:0070300 F phosphatidic acid binding
GO:0090307 P mitotic spindle assembly
8810 O_BomoMG25303_complete:A_BomoMG_comp41111_c7_seq9
294bp
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016602 C CCAAT-binding factor complex
GO:0046982 F protein heterodimerization activity
8811 O_BomoMG25306_complete:A_BomoMG_comp41111_c7_seq14
190bp
GO:0000139 C Golgi membrane
GO:0001578 P microtubule bundle formation
GO:0001933 P negative regulation of protein phosphorylation
GO:0004860 F protein kinase inhibitor activity
GO:0005215 F transporter activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006469 P negative regulation of protein kinase activity
GO:0006611 P protein export from nucleus
GO:0006810 P transport
GO:0008017 F microtubule binding
GO:0010923 P negative regulation of phosphatase activity
GO:0012505 C endomembrane system
GO:0015031 P protein transport
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0017156 P calcium-ion regulated exocytosis
GO:0019722 P calcium-mediated signaling
GO:0019900 F kinase binding
GO:0022406 P membrane docking
GO:0030133 C transport vesicle
GO:0031122 P cytoplasmic microtubule organization
GO:0031397 P negative regulation of protein ubiquitination
GO:0031953 P negative regulation of protein autophosphorylation
GO:0032088 P negative regulation of NF-kappaB transcription factor activity
GO:0032417 P positive regulation of sodium:proton antiporter activity
GO:0042308 P negative regulation of protein import into nucleus
GO:0046872 F metal ion binding
GO:0048306 F calcium-dependent protein binding
GO:0050821 P protein stabilization
GO:0051222 P positive regulation of protein transport
GO:0051259 P protein complex oligomerization
GO:0051453 P regulation of intracellular pH
GO:0060050 P positive regulation of protein glycosylation
GO:0061024 P membrane organization
GO:0061025 P membrane fusion
GO:0070062 C extracellular exosome
GO:0070885 P negative regulation of calcineurin-NFAT signaling cascade
GO:0071468 P cellular response to acidic pH
GO:0090314 P positive regulation of protein targeting to membrane
GO:1901214 P regulation of neuron death
8812 O_BomoMG25309_complete:A_BomoMG_comp41111_c8_seq1
136bp
8813 O_BomoMG25310_5prime_partial:A_BomoMG_comp41111_c8_seq3
390bp
8814 O_BomoMG25315_complete:A_BomoMG_comp41111_c8_seq6
136bp
8815 O_BomoMG25317_complete:A_BomoMG_comp41111_c8_seq8
125bp
8816 O_BomoMG25324_complete:A_BomoMG_comp41114_c4_seq1
237bp
8817 O_BomoMG25331_complete:A_BomoMG_comp41114_c4_seq6
237bp
8818 O_BomoMG25335_3prime_partial:A_BomoMG_comp41114_c4_seq7
812bp
8819 O_BomoMG25336_complete:A_BomoMG_comp41114_c4_seq7
793bp
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
8820 O_BomoMG25338_5prime_partial:A_BomoMG_comp41114_c4_seq7
326bp
previous next from show/16985

- SilkBase 1999-2023 -