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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8071 O_BomoMG23933_5prime_partial:A_BomoMG_comp41030_c3_seq17
551bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071987 F WD40-repeat domain binding
GO:0072422 P DNA damage checkpoint signaling
8072 O_BomoMG23935_3prime_partial:A_BomoMG_comp41030_c3_seq18
286bp
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071987 F WD40-repeat domain binding
GO:0072422 P DNA damage checkpoint signaling
8073 O_BomoMG23936_complete:A_BomoMG_comp41030_c3_seq19
120bp
8074 O_BomoMG23937_complete:A_BomoMG_comp41031_c0_seq14
194bp
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006897 P endocytosis
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
8075 O_BomoMG23938_5prime_partial:A_BomoMG_comp41031_c0_seq19
353bp
GO:0000139 C Golgi membrane
GO:0005537 F mannose binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0006457 P protein folding
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030134 C COPII-coated ER to Golgi transport vesicle
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
8076 O_BomoMG23939_complete:A_BomoMG_comp41031_c0_seq21
194bp
GO:0005737 C cytoplasm
GO:0006629 P lipid metabolic process
GO:0006897 P endocytosis
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
8077 O_BomoMG23940_5prime_partial:A_BomoMG_comp41032_c0_seq2
385bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8078 O_BomoMG23941_complete:A_BomoMG_comp41032_c0_seq2
337bp
8079 O_BomoMG23943_5prime_partial:A_BomoMG_comp41032_c0_seq4
410bp
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
8080 O_BomoMG23944_complete:A_BomoMG_comp41032_c0_seq4
337bp
8081 O_BomoMG23948_complete:A_BomoMG_comp41035_c0_seq1
942bp
GO:0005319 F lipid transporter activity
GO:0005576 C extracellular region
GO:0005635 C nuclear envelope
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005887 C integral component of plasma membrane
GO:0006486 P protein glycosylation
GO:0006629 P lipid metabolic process
GO:0007041 P lysosomal transport
GO:0007165 P signal transduction
GO:0008158 F hedgehog receptor activity
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008206 P bile acid metabolic process
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030301 P cholesterol transport
GO:0031902 C late endosome membrane
GO:0042632 P cholesterol homeostasis
GO:0048471 C perinuclear region of cytoplasm
8082 O_BomoMG23950_complete:A_BomoMG_comp41035_c0_seq2
942bp
GO:0005319 F lipid transporter activity
GO:0005576 C extracellular region
GO:0005635 C nuclear envelope
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005783 C endoplasmic reticulum
GO:0005887 C integral component of plasma membrane
GO:0006486 P protein glycosylation
GO:0006629 P lipid metabolic process
GO:0007041 P lysosomal transport
GO:0007165 P signal transduction
GO:0008158 F hedgehog receptor activity
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008206 P bile acid metabolic process
GO:0015485 F cholesterol binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030301 P cholesterol transport
GO:0031902 C late endosome membrane
GO:0042632 P cholesterol homeostasis
GO:0048471 C perinuclear region of cytoplasm
8083 O_BomoMG23951_5prime_partial:A_BomoMG_comp41035_c0_seq2
391bp
GO:0003993 F acid phosphatase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005765 C lysosomal membrane
GO:0005886 C plasma membrane
GO:0006144 P purine nucleobase metabolic process
GO:0006772 P thiamine metabolic process
GO:0008253 F 5'-nucleotidase activity
GO:0009117 P nucleotide metabolic process
GO:0012506 C vesicle membrane
GO:0016021 C integral component of membrane
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030175 C filopodium
GO:0042131 F thiamine phosphate phosphatase activity
GO:0042802 F identical protein binding
GO:0046085 P adenosine metabolic process
GO:0051930 P regulation of sensory perception of pain
GO:0052642 F lysophosphatidic acid phosphatase activity
GO:0060168 P positive regulation of adenosine receptor signaling pathway
GO:0070062 C extracellular exosome
8084 O_BomoMG23956_complete:A_BomoMG_comp41037_c0_seq1
495bp
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
8085 O_BomoMG23957_complete:A_BomoMG_comp41037_c0_seq2
475bp
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
8086 O_BomoMG23958_complete:A_BomoMG_comp41037_c0_seq3
527bp
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
8087 O_BomoMG23959_complete:A_BomoMG_comp41037_c0_seq4
495bp
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
8088 O_BomoMG2395_3prime_partial:A_BomoMG_comp21745_c0_seq1
1013bp
 PREDICTED:_protein_wings_apart-like_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006325 P chromatin organization
GO:0007059 P chromosome segregation
GO:0007062 P sister chromatid cohesion
GO:0016321 P female meiosis chromosome segregation
GO:0019233 P sensory perception of pain
GO:0051321 P meiotic cell cycle
8089 O_BomoMG23960_complete:A_BomoMG_comp41037_c0_seq5
547bp
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
8090 O_BomoMG23961_complete:A_BomoMG_comp41037_c0_seq6
475bp
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
8091 O_BomoMG23962_complete:A_BomoMG_comp41038_c0_seq1
117bp
8092 O_BomoMG23963_complete:A_BomoMG_comp41038_c0_seq2
719bp
8093 O_BomoMG23964_complete:A_BomoMG_comp41039_c0_seq1
639bp
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004713 F protein tyrosine kinase activity
GO:0004714 F transmembrane receptor protein tyrosine kinase activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0007165 P signal transduction
GO:0007169 P transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018108 P peptidyl-tyrosine phosphorylation
GO:0042052 P rhabdomere development
GO:0046716 P muscle cell cellular homeostasis
GO:0072499 P photoreceptor cell axon guidance
8094 O_BomoMG23965_complete:A_BomoMG_comp41039_c1_seq3
571bp
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006349 P regulation of gene expression by genomic imprinting
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0010628 P positive regulation of gene expression
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0042393 F histone binding
GO:0043046 P DNA methylation involved in gamete generation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051569 P regulation of histone H3-K4 methylation
8095 O_BomoMG23967_complete:A_BomoMG_comp41039_c1_seq10
650bp
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006349 P regulation of gene expression by genomic imprinting
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0010628 P positive regulation of gene expression
GO:0016568 P chromatin organization
GO:0016571 P histone methylation
GO:0042393 F histone binding
GO:0043046 P DNA methylation involved in gamete generation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051569 P regulation of histone H3-K4 methylation
8096 O_BomoMG2396_3prime_partial:A_BomoMG_comp21745_c0_seq2
496bp
 PREDICTED:_protein_wings_apart-like_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006325 P chromatin organization
GO:0007059 P chromosome segregation
GO:0007062 P sister chromatid cohesion
GO:0016321 P female meiosis chromosome segregation
GO:0019233 P sensory perception of pain
GO:0051321 P meiotic cell cycle
8097 O_BomoMG23971_5prime_partial:A_BomoMG_comp41039_c4_seq3
106bp
8098 O_BomoMG23972_5prime_partial:A_BomoMG_comp41039_c4_seq6
314bp
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0042675 P compound eye cone cell differentiation
GO:0046533 P negative regulation of photoreceptor cell differentiation
GO:0050931 P pigment cell differentiation
GO:0098595 C perivitelline space
8099 O_BomoMG23973_complete:A_BomoMG_comp41041_c2_seq1
657bp
8100 O_BomoMG23974_complete:A_BomoMG_comp41041_c2_seq2
657bp
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