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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
5221 O_BomoMG18775_complete:A_BomoMG_comp40526_c0_seq1
294bp
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005887 C integral component of plasma membrane
GO:0006006 P glucose metabolic process
GO:0006094 P gluconeogenesis
GO:0006412 P translation
GO:0006810 P transport
GO:0015367 F oxoglutarate:malate antiporter activity
GO:0015742 P alpha-ketoglutarate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0044822 F RNA binding
5222 O_BomoMG18776_complete:A_BomoMG_comp40526_c0_seq2
294bp
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005887 C integral component of plasma membrane
GO:0006006 P glucose metabolic process
GO:0006094 P gluconeogenesis
GO:0006412 P translation
GO:0006810 P transport
GO:0015367 F oxoglutarate:malate antiporter activity
GO:0015742 P alpha-ketoglutarate transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0044822 F RNA binding
5223 O_BomoMG18778_3prime_partial:A_BomoMG_comp40527_c0_seq1
347bp
5224 O_BomoMG18779_internal:A_BomoMG_comp40527_c1_seq1
238bp
5225 O_BomoMG18780_internal:A_BomoMG_comp40527_c1_seq2
518bp
5226 O_BomoMG18781_5prime_partial:A_BomoMG_comp40527_c1_seq3
259bp
5227 O_BomoMG18783_complete:A_BomoMG_comp40528_c0_seq1
828bp
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
5228 O_BomoMG18784_3prime_partial:A_BomoMG_comp40528_c0_seq2
517bp
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
5229 O_BomoMG18785_complete:A_BomoMG_comp40528_c0_seq3
856bp
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
5230 O_BomoMG18787_complete:A_BomoMG_comp40528_c0_seq4
856bp
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
5231 O_BomoMG18789_complete:A_BomoMG_comp40528_c0_seq5
828bp
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
5232 O_BomoMG18790_3prime_partial:A_BomoMG_comp40528_c0_seq6
517bp
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0043231 C intracellular membrane-bounded organelle
5233 O_BomoMG18791_5prime_partial:A_BomoMG_comp40529_c0_seq1
249bp
5234 O_BomoMG18792_5prime_partial:A_BomoMG_comp40529_c0_seq3
254bp
GO:0005198 F structural molecule activity
GO:0005882 C intermediate filament
GO:0005883 C neurofilament
5235 O_BomoMG18793_5prime_partial:A_BomoMG_comp40529_c0_seq6
265bp
5236 O_BomoMG18794_5prime_partial:A_BomoMG_comp40531_c0_seq1
217bp
5237 O_BomoMG18799_complete:A_BomoMG_comp40532_c2_seq1
180bp
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006605 P protein targeting
GO:0006606 P protein import into nucleus
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0015031 P protein transport
GO:0017056 F structural constituent of nuclear pore
GO:0036228 P protein localization to nuclear inner membrane
GO:0044613 C nuclear pore central transport channel
GO:0051028 P mRNA transport
5238 O_BomoMG187_internal:A_BomoMG_comp17419_c0_seq1
110bp
 PREDICTED:_uncharacterized_protein_LOC101735966_[Bombyx_mori]
5239 O_BomoMG18800_3prime_partial:A_BomoMG_comp40532_c2_seq2
206bp
GO:0016055 P Wnt signaling pathway
5240 O_BomoMG18801_5prime_partial:A_BomoMG_comp40532_c2_seq3
138bp
GO:0005487 F structural constituent of nuclear pore
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006605 P protein targeting
GO:0006606 P protein import into nucleus
GO:0006607 P NLS-bearing protein import into nucleus
GO:0006810 P transport
GO:0006913 P nucleocytoplasmic transport
GO:0006999 P nuclear pore organization
GO:0015031 P protein transport
GO:0017056 F structural constituent of nuclear pore
GO:0036228 P protein localization to nuclear inner membrane
GO:0044613 C nuclear pore central transport channel
GO:0051028 P mRNA transport
5241 O_BomoMG18802_3prime_partial:A_BomoMG_comp40532_c2_seq4
286bp
GO:0016055 P Wnt signaling pathway
5242 O_BomoMG18803_complete:A_BomoMG_comp40534_c0_seq3
166bp
5243 O_BomoMG18804_complete:A_BomoMG_comp40535_c0_seq1
107bp
GO:0000922 C spindle pole
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006508 P proteolysis
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0051301 P cell division
5244 O_BomoMG18805_5prime_partial:A_BomoMG_comp40535_c0_seq2
349bp
5245 O_BomoMG18810_5prime_partial:A_BomoMG_comp40535_c0_seq4
349bp
5246 O_BomoMG18814_3prime_partial:A_BomoMG_comp40535_c0_seq8
143bp
GO:0000922 C spindle pole
GO:0004843 F thiol-dependent deubiquitinase
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006508 P proteolysis
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0010212 P response to ionizing radiation
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0045739 P positive regulation of DNA repair
GO:0046872 F metal ion binding
GO:0051301 P cell division
GO:0070531 C BRCA1-A complex
GO:0070536 P protein K63-linked deubiquitination
GO:0070537 P histone H2A K63-linked deubiquitination
GO:0070552 C BRISC complex
5247 O_BomoMG18815_5prime_partial:A_BomoMG_comp40535_c0_seq9
349bp
5248 O_BomoMG18816_complete:A_BomoMG_comp40535_c0_seq9
265bp
GO:0003674 F molecular_function
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006302 P double-strand break repair
GO:0006508 P proteolysis
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0010212 P response to ionizing radiation
GO:0016787 F hydrolase activity
GO:0031572 P mitotic G2 DNA damage checkpoint signaling
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0045739 P positive regulation of DNA repair
GO:0046872 F metal ion binding
GO:0070531 C BRCA1-A complex
GO:0070536 P protein K63-linked deubiquitination
GO:0070537 P histone H2A K63-linked deubiquitination
GO:0070552 C BRISC complex
5249 O_BomoMG18819_complete:A_BomoMG_comp40535_c0_seq10
107bp
GO:0000922 C spindle pole
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006508 P proteolysis
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0051301 P cell division
5250 O_BomoMG1881_internal:A_BomoMG_comp20950_c0_seq2
190bp
 PREDICTED:_ribosome_biogenesis_protein_BOP1_homolog_[Bombyx_mori]
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000466 P maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030687 C preribosome, large subunit precursor
GO:0042254 P ribosome biogenesis
GO:0042273 P ribosomal large subunit biogenesis
GO:0043021 F ribonucleoprotein complex binding
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