SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
4891 O_BomoMG18223_complete:A_BomoMG_comp40446_c1_seq8
387bp
4892 O_BomoMG18225_complete:A_BomoMG_comp40446_c1_seq9
657bp
4893 O_BomoMG18227_3prime_partial:A_BomoMG_comp40447_c0_seq1
252bp
4894 O_BomoMG18230_complete:A_BomoMG_comp40447_c0_seq2
211bp
4895 O_BomoMG18232_3prime_partial:A_BomoMG_comp40447_c0_seq4
239bp
4896 O_BomoMG18237_complete:A_BomoMG_comp40447_c0_seq5
224bp
4897 O_BomoMG18239_complete:A_BomoMG_comp40447_c0_seq6
224bp
4898 O_BomoMG1823_5prime_partial:A_BomoMG_comp20839_c0_seq3
112bp
 PREDICTED:_uncharacterized_protein_LOC105841267_[Bombyx_mori]
4899 O_BomoMG18241_3prime_partial:A_BomoMG_comp40447_c0_seq8
239bp
4900 O_BomoMG18244_3prime_partial:A_BomoMG_comp40447_c0_seq9
252bp
4901 O_BomoMG18247_complete:A_BomoMG_comp40447_c0_seq10
211bp
4902 O_BomoMG18249_internal:A_BomoMG_comp40448_c1_seq1
483bp
GO:0003779 F actin binding
GO:0004864 F protein phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008157 F protein phosphatase 1 binding
GO:0008599 F protein phosphatase regulator activity
GO:0030054 C cell junction
GO:0031032 P actomyosin structure organization
GO:0031532 P actin cytoskeleton reorganization
GO:0043086 P negative regulation of catalytic activity
GO:0043149 P stress fiber assembly
GO:0045202 C synapse
GO:0050790 P regulation of catalytic activity
4903 O_BomoMG1824_internal:A_BomoMG_comp20846_c0_seq1
102bp
 PREDICTED:_ankyrin_repeat,_SAM_and_basic_leucine_zipper_domain-containing_protein_1_[Amyelois_transitella]
4904 O_BomoMG18251_3prime_partial:A_BomoMG_comp40448_c1_seq2
485bp
GO:0003779 F actin binding
GO:0004864 F protein phosphatase inhibitor activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008157 F protein phosphatase 1 binding
GO:0008599 F protein phosphatase regulator activity
GO:0030054 C cell junction
GO:0031032 P actomyosin structure organization
GO:0031532 P actin cytoskeleton reorganization
GO:0043086 P negative regulation of catalytic activity
GO:0043149 P stress fiber assembly
GO:0045202 C synapse
GO:0050790 P regulation of catalytic activity
4905 O_BomoMG18253_complete:A_BomoMG_comp40448_c3_seq1
104bp
4906 O_BomoMG18255_3prime_partial:A_BomoMG_comp40451_c0_seq1
1265bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0010634 P positive regulation of epithelial cell migration
GO:0016607 C nuclear speck
GO:0033601 P positive regulation of mammary gland epithelial cell proliferation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1903691 P positive regulation of wound healing, spreading of epidermal cells
GO:2000394 P positive regulation of lamellipodium morphogenesis
4907 O_BomoMG18258_internal:A_BomoMG_comp40451_c0_seq2
553bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
4908 O_BomoMG18259_3prime_partial:A_BomoMG_comp40451_c0_seq3
1265bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0010634 P positive regulation of epithelial cell migration
GO:0016607 C nuclear speck
GO:0033601 P positive regulation of mammary gland epithelial cell proliferation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1903691 P positive regulation of wound healing, spreading of epidermal cells
GO:2000394 P positive regulation of lamellipodium morphogenesis
4909 O_BomoMG1825_3prime_partial:A_BomoMG_comp20846_c0_seq2
374bp
 PREDICTED:_ankyrin_repeat,_SAM_and_basic_leucine_zipper_domain-containing_protein_1_[Papilio_polytes]
GO:0005737 C cytoplasm
GO:0007140 P male meiotic nuclear division
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0031047 P gene silencing by RNA
GO:0034587 P piRNA metabolic process
GO:0043046 P DNA methylation involved in gamete generation
GO:0051321 P meiotic cell cycle
GO:0071546 C pi-body
4910 O_BomoMG18262_complete:A_BomoMG_comp40451_c0_seq4
1262bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0010634 P positive regulation of epithelial cell migration
GO:0016607 C nuclear speck
GO:0033601 P positive regulation of mammary gland epithelial cell proliferation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1903691 P positive regulation of wound healing, spreading of epidermal cells
GO:2000394 P positive regulation of lamellipodium morphogenesis
4911 O_BomoMG18265_complete:A_BomoMG_comp40451_c0_seq5
111bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0010634 P positive regulation of epithelial cell migration
GO:0016607 C nuclear speck
GO:0033601 P positive regulation of mammary gland epithelial cell proliferation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1903691 P positive regulation of wound healing, spreading of epidermal cells
GO:2000394 P positive regulation of lamellipodium morphogenesis
4912 O_BomoMG18266_5prime_partial:A_BomoMG_comp40451_c0_seq6
550bp
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
4913 O_BomoMG18267_complete:A_BomoMG_comp40451_c0_seq8
1262bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0010634 P positive regulation of epithelial cell migration
GO:0016607 C nuclear speck
GO:0033601 P positive regulation of mammary gland epithelial cell proliferation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1903691 P positive regulation of wound healing, spreading of epidermal cells
GO:2000394 P positive regulation of lamellipodium morphogenesis
4914 O_BomoMG1826_internal:A_BomoMG_comp20846_c0_seq3
108bp
 PREDICTED:_ankyrin_repeat,_SAM_and_basic_leucine_zipper_domain-containing_protein_1_[Amyelois_transitella]
4915 O_BomoMG18270_3prime_partial:A_BomoMG_comp40451_c0_seq9
114bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0010634 P positive regulation of epithelial cell migration
GO:0016607 C nuclear speck
GO:0033601 P positive regulation of mammary gland epithelial cell proliferation
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
GO:1900026 P positive regulation of substrate adhesion-dependent cell spreading
GO:1903691 P positive regulation of wound healing, spreading of epidermal cells
GO:2000394 P positive regulation of lamellipodium morphogenesis
4916 O_BomoMG18271_3prime_partial:A_BomoMG_comp40452_c0_seq1
205bp
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006468 P protein phosphorylation
GO:0006955 P immune response
GO:0008047 F enzyme activator activity
GO:0008285 P negative regulation of cell population proliferation
GO:0009615 P response to virus
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0034599 P cellular response to oxidative stress
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042473 P outer ear morphogenesis
GO:0042474 P middle ear morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043085 P positive regulation of catalytic activity
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048705 P skeletal system morphogenesis
GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
4917 O_BomoMG18272_5prime_partial:A_BomoMG_comp40452_c0_seq2
185bp
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0034599 P cellular response to oxidative stress
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042473 P outer ear morphogenesis
GO:0042474 P middle ear morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048705 P skeletal system morphogenesis
GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
4918 O_BomoMG18273_3prime_partial:A_BomoMG_comp40453_c0_seq1
115bp
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008150 P biological_process
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
4919 O_BomoMG18274_internal:A_BomoMG_comp40453_c0_seq2
100bp
4920 O_BomoMG18275_5prime_partial:A_BomoMG_comp40453_c0_seq3
280bp
previous next from show/16985

- SilkBase 1999-2023 -