SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/16985
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
3931 O_BomoMG16498_complete:A_BomoMG_comp40167_c1_seq2
109bp
3932 O_BomoMG16499_5prime_partial:A_BomoMG_comp40167_c1_seq3
328bp
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005689 C U12-type spliceosomal complex
GO:0006915 P apoptotic process
GO:0051384 P response to glucocorticoid
GO:0070234 P positive regulation of T cell apoptotic process
GO:2001235 P positive regulation of apoptotic signaling pathway
3933 O_BomoMG1649_complete:A_BomoMG_comp20549_c0_seq2
171bp
 thymosin_isoform_1_[Bombyx_mori]
GO:0003779 F actin binding
GO:0003785 F actin monomer binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0007015 P actin filament organization
3934 O_BomoMG16500_5prime_partial:A_BomoMG_comp40167_c1_seq4
167bp
3935 O_BomoMG16501_complete:A_BomoMG_comp40167_c1_seq4
109bp
3936 O_BomoMG16502_5prime_partial:A_BomoMG_comp40167_c1_seq5
187bp
3937 O_BomoMG16503_complete:A_BomoMG_comp40167_c1_seq5
109bp
3938 O_BomoMG16504_complete:A_BomoMG_comp40168_c0_seq1
981bp
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030490 P maturation of SSU-rRNA
GO:0030515 F snoRNA binding
GO:0030692 C Noc4p-Nop14p complex
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
GO:0042274 P ribosomal small subunit biogenesis
3939 O_BomoMG16506_complete:A_BomoMG_comp40168_c0_seq2
222bp
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030490 P maturation of SSU-rRNA
GO:0030515 F snoRNA binding
GO:0030692 C Noc4p-Nop14p complex
GO:0032040 C small-subunit processome
GO:0042254 P ribosome biogenesis
GO:0042274 P ribosomal small subunit biogenesis
GO:0044822 F RNA binding
3940 O_BomoMG16508_complete:A_BomoMG_comp40169_c0_seq2
204bp
GO:0003674 F molecular_function
GO:0005576 C extracellular region
GO:0007521 P muscle cell fate determination
3941 O_BomoMG1650_complete:A_BomoMG_comp20551_c0_seq1
183bp
 muscular_protein_20_[Bombyx_mori]
GO:0003779 F actin binding
GO:0007155 P cell adhesion
GO:0007520 P myoblast fusion
GO:0008360 P regulation of cell shape
GO:0043292 C contractile fiber
GO:1901739 P regulation of myoblast fusion
3942 O_BomoMG16510_complete:A_BomoMG_comp40170_c0_seq1
785bp
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005764 C lysosome
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008242 F omega peptidase activity
GO:0008270 F zinc ion binding
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0036459 F thiol-dependent deubiquitinase
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0071108 P protein K48-linked deubiquitination
3943 O_BomoMG16513_complete:A_BomoMG_comp40170_c0_seq2
802bp
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005764 C lysosome
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008242 F omega peptidase activity
GO:0008270 F zinc ion binding
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0036459 F thiol-dependent deubiquitinase
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0071108 P protein K48-linked deubiquitination
3944 O_BomoMG16516_complete:A_BomoMG_comp40171_c0_seq1
227bp
GO:0000226 P microtubule cytoskeleton organization
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0010470 P regulation of gastrulation
GO:0010717 P regulation of epithelial to mesenchymal transition
GO:0016020 C membrane
GO:0031252 C cell leading edge
GO:0045111 C intermediate filament cytoskeleton
GO:0045180 C basal cortex
GO:0045184 P establishment of protein localization
GO:0051497 P negative regulation of stress fiber assembly
GO:0051895 P negative regulation of focal adhesion assembly
GO:0070507 P regulation of microtubule cytoskeleton organization
GO:1903690 P negative regulation of wound healing, spreading of epidermal cells
GO:1904261 P positive regulation of basement membrane assembly involved in embryonic body morphogenesis
3945 O_BomoMG16517_3prime_partial:A_BomoMG_comp40171_c0_seq2
1225bp
GO:0010470 P regulation of gastrulation
GO:0010717 P regulation of epithelial to mesenchymal transition
GO:0045180 C basal cortex
GO:0070507 P regulation of microtubule cytoskeleton organization
GO:1904261 P positive regulation of basement membrane assembly involved in embryonic body morphogenesis
3946 O_BomoMG1651_complete:A_BomoMG_comp20552_c0_seq1
185bp
 signal_peptidase_complex_subunit_2_[Bombyx_mori]
GO:0005783 C endoplasmic reticulum
GO:0005787 C signal peptidase complex
GO:0005789 C endoplasmic reticulum membrane
GO:0006465 P signal peptide processing
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0045047 P protein targeting to ER
3947 O_BomoMG16521_complete:A_BomoMG_comp40171_c0_seq3
1495bp
GO:0000226 P microtubule cytoskeleton organization
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0010470 P regulation of gastrulation
GO:0010717 P regulation of epithelial to mesenchymal transition
GO:0016020 C membrane
GO:0031252 C cell leading edge
GO:0045111 C intermediate filament cytoskeleton
GO:0045180 C basal cortex
GO:0045184 P establishment of protein localization
GO:0051497 P negative regulation of stress fiber assembly
GO:0051895 P negative regulation of focal adhesion assembly
GO:0070507 P regulation of microtubule cytoskeleton organization
GO:1903690 P negative regulation of wound healing, spreading of epidermal cells
GO:1904261 P positive regulation of basement membrane assembly involved in embryonic body morphogenesis
3948 O_BomoMG16526_complete:A_BomoMG_comp40171_c0_seq4
227bp
GO:0000226 P microtubule cytoskeleton organization
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0010470 P regulation of gastrulation
GO:0010717 P regulation of epithelial to mesenchymal transition
GO:0016020 C membrane
GO:0031252 C cell leading edge
GO:0045111 C intermediate filament cytoskeleton
GO:0045180 C basal cortex
GO:0045184 P establishment of protein localization
GO:0051497 P negative regulation of stress fiber assembly
GO:0051895 P negative regulation of focal adhesion assembly
GO:0070507 P regulation of microtubule cytoskeleton organization
GO:1903690 P negative regulation of wound healing, spreading of epidermal cells
GO:1904261 P positive regulation of basement membrane assembly involved in embryonic body morphogenesis
3949 O_BomoMG16527_complete:A_BomoMG_comp40171_c0_seq5
211bp
GO:0000226 P microtubule cytoskeleton organization
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0010470 P regulation of gastrulation
GO:0010717 P regulation of epithelial to mesenchymal transition
GO:0016020 C membrane
GO:0031252 C cell leading edge
GO:0045111 C intermediate filament cytoskeleton
GO:0045180 C basal cortex
GO:0045184 P establishment of protein localization
GO:0051497 P negative regulation of stress fiber assembly
GO:0051895 P negative regulation of focal adhesion assembly
GO:0070507 P regulation of microtubule cytoskeleton organization
GO:1903690 P negative regulation of wound healing, spreading of epidermal cells
GO:1904261 P positive regulation of basement membrane assembly involved in embryonic body morphogenesis
3950 O_BomoMG16528_complete:A_BomoMG_comp40172_c0_seq1
940bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006364 P rRNA processing
GO:0042254 P ribosome biogenesis
GO:0042255 P ribosome assembly
GO:0072686 C mitotic spindle
3951 O_BomoMG16530_5prime_partial:A_BomoMG_comp40172_c0_seq2
207bp
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0042254 P ribosome biogenesis
GO:0042255 P ribosome assembly
GO:0044822 F RNA binding
3952 O_BomoMG16532_3prime_partial:A_BomoMG_comp40174_c0_seq1
160bp
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
3953 O_BomoMG16533_complete:A_BomoMG_comp40174_c0_seq1
134bp
3954 O_BomoMG16535_complete:A_BomoMG_comp40174_c0_seq2
202bp
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
3955 O_BomoMG16536_complete:A_BomoMG_comp40174_c0_seq2
141bp
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
3956 O_BomoMG16538_3prime_partial:A_BomoMG_comp40174_c0_seq3
404bp
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
3957 O_BomoMG1653_complete:A_BomoMG_comp20555_c0_seq1
251bp
 PREDICTED:_uncharacterized_protein_LOC106106265_[Papilio_polytes]
3958 O_BomoMG16540_complete:A_BomoMG_comp40174_c0_seq4
141bp
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
3959 O_BomoMG16542_complete:A_BomoMG_comp40174_c0_seq4
134bp
3960 O_BomoMG16543_3prime_partial:A_BomoMG_comp40174_c0_seq5
336bp
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
previous next from show/16985

- SilkBase 1999-2023 -