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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1411 O_BomoMG12183_5prime_partial:A_BomoMG_comp39029_c0_seq1
221bp
GO:0000151 C ubiquitin ligase complex
GO:0004176 F ATP-dependent peptidase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006508 P proteolysis
GO:0016567 P protein ubiquitination
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0035118 P embryonic pectoral fin morphogenesis
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0060173 P limb development
GO:0071600 P otic vesicle morphogenesis
1412 O_BomoMG12184_5prime_partial:A_BomoMG_comp39030_c0_seq1
427bp
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005750 C mitochondrial respiratory chain complex III
GO:0007005 P mitochondrion organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032981 P mitochondrial respiratory chain complex I assembly
GO:0033617 P mitochondrial cytochrome c oxidase assembly
GO:0034551 P mitochondrial respiratory chain complex III assembly
1413 O_BomoMG12186_5prime_partial:A_BomoMG_comp39031_c0_seq1
361bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001701 P in utero embryonic development
GO:0004857 F enzyme inhibitor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006006 P glucose metabolic process
GO:0008361 P regulation of cell size
GO:0016567 P protein ubiquitination
GO:0032869 P cellular response to insulin stimulus
GO:0035264 P multicellular organism growth
GO:0042393 F histone binding
GO:0042826 F histone deacetylase binding
GO:0043086 P negative regulation of catalytic activity
GO:0045717 P negative regulation of fatty acid biosynthetic process
GO:0055082 P cellular chemical homeostasis
1414 O_BomoMG12189_complete:A_BomoMG_comp39031_c0_seq2
676bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001701 P in utero embryonic development
GO:0004857 F enzyme inhibitor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005829 C cytosol
GO:0006006 P glucose metabolic process
GO:0008361 P regulation of cell size
GO:0016567 P protein ubiquitination
GO:0032869 P cellular response to insulin stimulus
GO:0035264 P multicellular organism growth
GO:0042393 F histone binding
GO:0042826 F histone deacetylase binding
GO:0043086 P negative regulation of catalytic activity
GO:0045717 P negative regulation of fatty acid biosynthetic process
GO:0055082 P cellular chemical homeostasis
1415 O_BomoMG1218_5prime_partial:A_BomoMG_comp20030_c1_seq1
262bp
 UPF0667_protein_C1orf55-like_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005634 C nucleus
1416 O_BomoMG12193_3prime_partial:A_BomoMG_comp39033_c0_seq1
820bp
GO:0003674 F molecular_function
GO:0003713 F transcription coactivator activity
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0008150 P biological_process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0008270 F zinc ion binding
GO:0010468 P regulation of gene expression
GO:0016568 P chromatin organization
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0035522 P monoubiquitinated histone H2A deubiquitination
GO:0036459 F thiol-dependent deubiquitinase
GO:0042393 F histone binding
GO:0043130 F ubiquitin binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045901 P positive regulation of translational elongation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0051289 P protein homotetramerization
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
GO:0070537 P histone H2A K63-linked deubiquitination
1417 O_BomoMG12194_5prime_partial:A_BomoMG_comp39033_c0_seq1
432bp
1418 O_BomoMG12196_internal:A_BomoMG_comp39034_c0_seq1
191bp
1419 O_BomoMG1219_5prime_partial:A_BomoMG_comp20042_c0_seq1
237bp
 PREDICTED:_uncharacterized_protein_LOC101742051_isoform_X2_[Bombyx_mori]
1420 O_BomoMG121_internal:A_BomoMG_comp17251_c0_seq1
272bp
 hypothetical_protein_KGM_00604_[Danaus_plexippus]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
1421 O_BomoMG12200_complete:A_BomoMG_comp39037_c0_seq2
355bp
1422 O_BomoMG12201_internal:A_BomoMG_comp39038_c0_seq2
510bp
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003053 P circadian regulation of heart rate
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008062 P eclosion rhythm
GO:0032922 P circadian regulation of gene expression
GO:0042594 P response to starvation
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048148 P behavioral response to cocaine
GO:0048511 P rhythmic process
1423 O_BomoMG12202_3prime_partial:A_BomoMG_comp39038_c0_seq3
142bp
1424 O_BomoMG12203_5prime_partial:A_BomoMG_comp39041_c0_seq2
218bp
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0070971 C endoplasmic reticulum exit site
GO:0090161 P Golgi ribbon formation
1425 O_BomoMG12204_5prime_partial:A_BomoMG_comp39041_c0_seq3
117bp
GO:0003674 F molecular_function
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0070971 C endoplasmic reticulum exit site
GO:0090161 P Golgi ribbon formation
1426 O_BomoMG12205_5prime_partial:A_BomoMG_comp39041_c0_seq4
239bp
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0070971 C endoplasmic reticulum exit site
GO:0090161 P Golgi ribbon formation
1427 O_BomoMG12206_5prime_partial:A_BomoMG_comp39042_c0_seq1
326bp
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031123 P RNA 3'-end processing
GO:0043631 P RNA polyadenylation
GO:0046872 F metal ion binding
1428 O_BomoMG12207_5prime_partial:A_BomoMG_comp39042_c0_seq2
326bp
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031123 P RNA 3'-end processing
GO:0043631 P RNA polyadenylation
GO:0046872 F metal ion binding
1429 O_BomoMG12208_3prime_partial:A_BomoMG_comp39042_c0_seq3
303bp
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0043631 P RNA polyadenylation
GO:0046872 F metal ion binding
1430 O_BomoMG12209_complete:A_BomoMG_comp39042_c0_seq4
311bp
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031123 P RNA 3'-end processing
GO:0043631 P RNA polyadenylation
GO:0046872 F metal ion binding
1431 O_BomoMG1220_internal:A_BomoMG_comp20044_c0_seq2
103bp
 PREDICTED:_vacuolar_protein_sorting-associated_protein_13D-like_[Plutella_xylostella]
1432 O_BomoMG12210_complete:A_BomoMG_comp39042_c0_seq5
311bp
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031123 P RNA 3'-end processing
GO:0043631 P RNA polyadenylation
GO:0046872 F metal ion binding
1433 O_BomoMG12211_internal:A_BomoMG_comp39043_c0_seq1
325bp
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1434 O_BomoMG12212_3prime_partial:A_BomoMG_comp39043_c1_seq1
747bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1435 O_BomoMG12213_5prime_partial:A_BomoMG_comp39043_c1_seq2
444bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1436 O_BomoMG12214_complete:A_BomoMG_comp39043_c1_seq3
589bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1437 O_BomoMG12215_internal:A_BomoMG_comp39043_c1_seq4
602bp
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1438 O_BomoMG12217_5prime_partial:A_BomoMG_comp39047_c0_seq1
191bp
GO:0000077 P DNA damage checkpoint signaling
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006974 P cellular response to DNA damage stimulus
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0071479 P cellular response to ionizing radiation
1439 O_BomoMG12218_5prime_partial:A_BomoMG_comp39047_c0_seq2
144bp
GO:0000077 P DNA damage checkpoint signaling
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006974 P cellular response to DNA damage stimulus
GO:0016180 P snRNA processing
GO:0032039 C integrator complex
GO:0042795 P snRNA transcription by RNA polymerase II
GO:0071479 P cellular response to ionizing radiation
1440 O_BomoMG12219_3prime_partial:A_BomoMG_comp39049_c0_seq1
390bp
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