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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
1351 O_BomoMG12077_internal:A_BomoMG_comp38990_c0_seq2
748bp
 PREDICTED:_unconventional_myosin-Va_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0003824 F catalytic activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005903 C brush border
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0016459 C myosin complex
GO:0017137 F small GTPase binding
GO:0032439 P endosomal transport
GO:0043234 C protein-containing complex
GO:0045179 C apical cortex
GO:0070062 C extracellular exosome
1352 O_BomoMG1207_internal:A_BomoMG_comp20019_c0_seq1
127bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_remodeling_and_spacing_factor_1-like_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005886 C plasma membrane
GO:0008201 F heparin binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016337 P cell-cell adhesion
1353 O_BomoMG12080_3prime_partial:A_BomoMG_comp38991_c0_seq1
497bp
 DNA_damage-binding_protein_1_[Papilio_xuthus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016567 P protein ubiquitination
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
1354 O_BomoMG12083_5prime_partial:A_BomoMG_comp38992_c0_seq1
380bp
 Arginine/serine-rich_protein_PNISR_[Papilio_machaon]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
1355 O_BomoMG12086_complete:A_BomoMG_comp38992_c0_seq2
408bp
 Arginine/serine-rich_protein_PNISR_[Papilio_machaon]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
1356 O_BomoMG12088_internal:A_BomoMG_comp38993_c0_seq1
269bp
 PREDICTED:_protein_lingerer_isoform_X3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0007610 P behavior
GO:0007620 P copulation
1357 O_BomoMG12090_internal:A_BomoMG_comp38993_c0_seq2
264bp
 PREDICTED:_protein_lingerer_isoform_X3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0007610 P behavior
GO:0007620 P copulation
1358 O_BomoMG12091_complete:A_BomoMG_comp38994_c0_seq1
295bp
 PREDICTED:_alpha-tubulin_N-acetyltransferase_1-like_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005905 C clathrin-coated pit
GO:0005925 C focal adhesion
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0019799 F tubulin N-acetyltransferase activity
GO:0030054 C cell junction
GO:0030424 C axon
GO:0042995 C cell projection
GO:0048666 P neuron development
GO:0070507 P regulation of microtubule cytoskeleton organization
GO:0071929 P alpha-tubulin acetylation
1359 O_BomoMG12092_5prime_partial:A_BomoMG_comp38994_c0_seq2
285bp
 PREDICTED:_alpha-tubulin_N-acetyltransferase_1-like_isoform_X2_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005905 C clathrin-coated pit
GO:0005925 C focal adhesion
GO:0016020 C membrane
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0019799 F tubulin N-acetyltransferase activity
GO:0030054 C cell junction
GO:0030424 C axon
GO:0042995 C cell projection
GO:0048666 P neuron development
GO:0070507 P regulation of microtubule cytoskeleton organization
GO:0071929 P alpha-tubulin acetylation
1360 O_BomoMG12093_5prime_partial:A_BomoMG_comp38995_c0_seq1
494bp
 PREDICTED:_uncharacterized_protein_LOC105394290_[Plutella_xylostella]
1361 O_BomoMG12095_3prime_partial:A_BomoMG_comp38997_c0_seq1
305bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Amyelois_transitella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
1362 O_BomoMG12096_complete:A_BomoMG_comp39000_c0_seq1
288bp
 PREDICTED:_palmitoyltransferase_ZDHHC18_[Amyelois_transitella]
GO:0005783 C endoplasmic reticulum
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016409 F palmitoyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018345 P protein palmitoylation
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0046872 F metal ion binding
1363 O_BomoMG12099_3prime_partial:A_BomoMG_comp39000_c0_seq2
320bp
 PREDICTED:_palmitoyltransferase_ZDHHC18_[Amyelois_transitella]
GO:0005783 C endoplasmic reticulum
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016409 F palmitoyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018345 P protein palmitoylation
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0046872 F metal ion binding
1364 O_BomoMG1209_5prime_partial:A_BomoMG_comp20021_c0_seq1
560bp
 PREDICTED:_jmjC_domain-containing_histone_demethylation_protein_1_isoform_X3_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0019005 C SCF ubiquitin ligase complex
GO:0019233 P sensory perception of pain
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031519 C PcG protein complex
GO:0033522 P histone H2A ubiquitination
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
1365 O_BomoMG120_internal:A_BomoMG_comp17248_c0_seq1
106bp
 PREDICTED:_potassium_channel_subfamily_K_member_9-like_[Amyelois_transitella]
1366 O_BomoMG12102_complete:A_BomoMG_comp39000_c0_seq3
288bp
 PREDICTED:_palmitoyltransferase_ZDHHC18_[Amyelois_transitella]
GO:0005783 C endoplasmic reticulum
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016409 F palmitoyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018345 P protein palmitoylation
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0046872 F metal ion binding
1367 O_BomoMG12105_3prime_partial:A_BomoMG_comp39000_c0_seq4
320bp
 PREDICTED:_palmitoyltransferase_ZDHHC18_[Amyelois_transitella]
GO:0005783 C endoplasmic reticulum
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016409 F palmitoyltransferase activity
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0018345 P protein palmitoylation
GO:0019706 F protein-cysteine S-palmitoyltransferase activity
GO:0046872 F metal ion binding
1368 O_BomoMG12108_complete:A_BomoMG_comp39001_c0_seq1
763bp
 hydroxyacyl-coenzyme_A_dehydrogenase_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003824 F catalytic activity
GO:0003857 F 3-hydroxyacyl-CoA dehydrogenase activity
GO:0003985 F acetyl-CoA C-acetyltransferase activity
GO:0003988 F acetyl-CoA C-acyltransferase activity
GO:0004300 F enoyl-CoA hydratase activity
GO:0005515 F protein binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016507 C mitochondrial fatty acid beta-oxidation multienzyme complex
GO:0016508 F long-chain-enoyl-CoA hydratase activity
GO:0016509 F long-chain-3-hydroxyacyl-CoA dehydrogenase activity
GO:0016829 F lyase activity
GO:0032403 F protein-containing complex binding
GO:0032868 P response to insulin
GO:0035965 P cardiolipin acyl-chain remodeling
GO:0042493 P response to xenobiotic stimulus
GO:0042645 C mitochondrial nucleoid
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
1369 O_BomoMG12110_internal:A_BomoMG_comp39002_c0_seq2
287bp
 PREDICTED:_uncharacterized_protein_LOC101740329_[Bombyx_mori]
1370 O_BomoMG12111_complete:A_BomoMG_comp39003_c0_seq1
250bp
 beadex/dLMO_protein_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
1371 O_BomoMG12114_internal:A_BomoMG_comp39006_c0_seq1
361bp
 PREDICTED:_lysine-specific_demethylase_3B_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007596 P blood coagulation
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0032454 F histone H3-methyl-lysine-9 demethylase activity
GO:0033169 P histone H3-K9 demethylation
GO:0046872 F metal ion binding
GO:0046966 F thyroid hormone receptor binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
1372 O_BomoMG12116_3prime_partial:A_BomoMG_comp39006_c0_seq2
379bp
 PREDICTED:_lysine-specific_demethylase_3B_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007596 P blood coagulation
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0032454 F histone H3-methyl-lysine-9 demethylase activity
GO:0033169 P histone H3-K9 demethylation
GO:0046872 F metal ion binding
GO:0046966 F thyroid hormone receptor binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
1373 O_BomoMG12117_complete:A_BomoMG_comp39006_c0_seq2
350bp
 PREDICTED:_lysine-specific_demethylase_3B_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0003677 F DNA binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
1374 O_BomoMG12119_complete:A_BomoMG_comp39006_c0_seq2
122bp
 PREDICTED:_protein_Shroom4_[Equus_asinus]
1375 O_BomoMG1211_5prime_partial:A_BomoMG_comp20022_c0_seq1
315bp
 PREDICTED:_pre-mRNA-splicing_factor_38A_[Papilio_machaon]
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
1376 O_BomoMG12120_5prime_partial:A_BomoMG_comp39008_c1_seq1
165bp
 PREDICTED:_U2_snRNP-associated_SURP_motif-containing_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006396 P RNA processing
1377 O_BomoMG12122_5prime_partial:A_BomoMG_comp39008_c1_seq2
165bp
 PREDICTED:_U2_snRNP-associated_SURP_motif-containing_protein_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006396 P RNA processing
1378 O_BomoMG12124_internal:A_BomoMG_comp39009_c1_seq1
527bp
 PREDICTED:_retinoblastoma-like_protein_1_[Papilio_machaon]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0008134 F transcription factor binding
GO:0010629 P negative regulation of gene expression
GO:0016568 P chromatin organization
GO:0043550 P regulation of lipid kinase activity
GO:0051726 P regulation of cell cycle
GO:1990841 F promoter-specific chromatin binding
1379 O_BomoMG12126_internal:A_BomoMG_comp39010_c0_seq1
216bp
 PREDICTED:_transcriptional_regulator_ATRX-like_[Plutella_xylostella]
1380 O_BomoMG12127_5prime_partial:A_BomoMG_comp39010_c1_seq1
418bp
 Myb-like_protein_X,_partial_[Operophtera_brumata]
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