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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
871 O_BomoFB10785_3prime_partial:A_BomoFB_comp9871_c0_seq2
217bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_U-like_protein_2_[Plutella_xylostella]
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0009615 P response to virus
GO:0019899 F enzyme binding
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
872 O_BomoFB10786_complete:A_BomoFB_comp9871_c0_seq2
102bp
873 O_BomoFB10787_complete:A_BomoFB_comp9871_c0_seq2
100bp
 uncharacterized_protein_Dana_GF11382,_isoform_C_[Drosophila_ananassae]
874 O_BomoFB10788_3prime_partial:A_BomoFB_comp9871_c0_seq3
932bp
 PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_U-like_protein_2_isoform_X2_[Papilio_xuthus]
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0009615 P response to virus
GO:0019899 F enzyme binding
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
875 O_BomoFB10789_complete:A_BomoFB_comp9871_c0_seq3
227bp
876 O_BomoFB1078_complete:A_BomoFB_comp2870_c0_seq1
267bp
 PREDICTED:_TATA-box-binding_protein-like_[Papilio_xuthus]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006402 P mRNA catabolic process
GO:0007275 P multicellular organism development
GO:0007369 P gastrulation
877 O_BomoFB10790_complete:A_BomoFB_comp9871_c0_seq3
102bp
878 O_BomoFB10791_complete:A_BomoFB_comp9871_c0_seq3
100bp
 uncharacterized_protein_Dana_GF11382,_isoform_C_[Drosophila_ananassae]
879 O_BomoFB10792_5prime_partial:A_BomoFB_comp9872_c0_seq1
480bp
 PREDICTED:_vanin-like_protein_3_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006807 P nitrogen compound metabolic process
GO:0008150 P biological_process
GO:0016787 F hydrolase activity
GO:0016810 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0016811 F hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
880 O_BomoFB10793_5prime_partial:A_BomoFB_comp9873_c0_seq3
106bp
 splicing_factor_proline-_and_glutamine-rich_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0007601 P visual perception
GO:0050896 P response to stimulus
881 O_BomoFB10794_complete:A_BomoFB_comp9874_c1_seq1
343bp
 PREDICTED:_immunoglobulin-binding_protein_1b-like_[Plutella_xylostella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005874 C microtubule
GO:0008601 F protein phosphatase regulator activity
GO:0009966 P regulation of signal transduction
GO:0019904 F protein domain specific binding
GO:0031434 F mitogen-activated protein kinase kinase binding
GO:0032403 F protein-containing complex binding
GO:0032873 P negative regulation of stress-activated MAPK cascade
GO:0034047 P regulation of phosphoprotein phosphatase activity
GO:0034612 P response to tumor necrosis factor
GO:0035306 P positive regulation of dephosphorylation
GO:0035308 P negative regulation of protein dephosphorylation
GO:0042113 P B cell activation
GO:0043154 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051721 F protein phosphatase 2A binding
GO:0060632 P regulation of microtubule-based movement
GO:0070555 P response to interleukin-1
GO:2001234 P negative regulation of apoptotic signaling pathway
882 O_BomoFB10795_complete:A_BomoFB_comp9875_c0_seq1
151bp
 PREDICTED:_uncharacterized_protein_LOC106099995_[Papilio_polytes]
GO:0001054 F RNA polymerase I activity
GO:0001055 F RNA polymerase II activity
GO:0001056 F RNA polymerase III activity
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005665 C RNA polymerase II, core complex
GO:0005666 C RNA polymerase III complex
GO:0005730 C nucleolus
GO:0005736 C RNA polymerase I complex
GO:0006351 P transcription, DNA-templated
GO:0006360 P transcription by RNA polymerase I
GO:0006366 P transcription by RNA polymerase II
GO:0006383 P transcription by RNA polymerase III
GO:0034587 P piRNA metabolic process
883 O_BomoFB10796_complete:A_BomoFB_comp9875_c0_seq1
103bp
 MULTISPECIES:_LysR_family_transcriptional_regulator_[Ensifer]
884 O_BomoFB10797_3prime_partial:A_BomoFB_comp9876_c0_seq1
366bp
 short-chain_specific_acyl-CoA_dehydrogenase_[Agrotis_segetum]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0004085 F butyryl-CoA dehydrogenase activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0042594 P response to starvation
GO:0046359 P butyrate catabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0051289 P protein homotetramerization
GO:0051384 P response to glucocorticoid
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
885 O_BomoFB10798_complete:A_BomoFB_comp9876_c0_seq1
125bp
 hypothetical_protein_ACD_75C01044G0002_[uncultured_bacterium]
886 O_BomoFB10799_complete:A_BomoFB_comp9876_c0_seq2
375bp
 short-chain_specific_acyl-CoA_dehydrogenase_[Agrotis_segetum]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0004085 F butyryl-CoA dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0031966 C mitochondrial membrane
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0042594 P response to starvation
GO:0046359 P butyrate catabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0051289 P protein homotetramerization
GO:0051384 P response to glucocorticoid
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
887 O_BomoFB1079_5prime_partial:A_BomoFB_comp2870_c0_seq1
105bp
 hypothetical_protein_AAX06_01485_[Moraxella_bovoculi]
888 O_BomoFB107_internal:A_BomoFB_comp297_c1_seq1
221bp
 PREDICTED:_anaphase-promoting_complex_subunit_1-like_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005680 C anaphase-promoting complex
GO:0005829 C cytosol
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016567 P protein ubiquitination
GO:0031145 P anaphase-promoting complex-dependent catabolic process
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051301 P cell division
GO:0051436 P obsolete negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 P obsolete positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition
GO:0051439 P obsolete regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070979 P protein K11-linked ubiquitination
889 O_BomoFB10800_complete:A_BomoFB_comp9876_c0_seq2
125bp
 hypothetical_protein_ACD_75C01044G0002_[uncultured_bacterium]
890 O_BomoFB10801_3prime_partial:A_BomoFB_comp9876_c0_seq3
332bp
 PREDICTED:_short-chain_specific_acyl-CoA_dehydrogenase,_mitochondrial-like_[Amyelois_transitella]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0004085 F butyryl-CoA dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0031966 C mitochondrial membrane
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0042594 P response to starvation
GO:0046359 P butyrate catabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0051289 P protein homotetramerization
GO:0051384 P response to glucocorticoid
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
891 O_BomoFB10802_complete:A_BomoFB_comp9876_c0_seq3
125bp
 hypothetical_protein_ACD_75C01044G0002_[uncultured_bacterium]
892 O_BomoFB10803_complete:A_BomoFB_comp9876_c0_seq5
409bp
 short-chain_specific_acyl-CoA_dehydrogenase_[Agrotis_segetum]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0004085 F butyryl-CoA dehydrogenase activity
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0042594 P response to starvation
GO:0046359 P butyrate catabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0051289 P protein homotetramerization
GO:0051384 P response to glucocorticoid
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
893 O_BomoFB10804_complete:A_BomoFB_comp9876_c0_seq5
125bp
 hypothetical_protein_ACD_75C01044G0002_[uncultured_bacterium]
894 O_BomoFB10805_complete:A_BomoFB_comp9879_c0_seq2
416bp
 PREDICTED:_protein_FAM46C_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
895 O_BomoFB10806_5prime_partial:A_BomoFB_comp9879_c0_seq2
139bp
 hypothetical_protein_ALC62_14114,_partial_[Cyphomyrmex_costatus]
896 O_BomoFB10807_3prime_partial:A_BomoFB_comp9880_c0_seq1
729bp
 PREDICTED:_RNA_polymerase-associated_protein_CTR9_homolog_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035327 C euchromatin
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051571 P positive regulation of histone H3-K4 methylation
GO:0080182 P histone H3-K4 trimethylation
897 O_BomoFB10808_complete:A_BomoFB_comp9880_c0_seq1
129bp
 PREDICTED:_tyrosine-protein_phosphatase_non-receptor_type_20_isoform_X4_[Sus_scrofa]
898 O_BomoFB10809_5prime_partial:A_BomoFB_comp9881_c0_seq1
408bp
 nicotinic_acetylcholine_receptor_beta_3_subunit_[Bombyx_mori]
GO:0000187 P obsolete activation of MAPK activity
GO:0001540 F amyloid-beta binding
GO:0001666 P response to hypoxia
GO:0004889 F acetylcholine-gated cation-selective channel activity
GO:0005216 F ion channel activity
GO:0005230 F extracellular ligand-gated ion channel activity
GO:0005886 C plasma membrane
GO:0005892 C acetylcholine-gated channel complex
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0007165 P signal transduction
GO:0007271 P synaptic transmission, cholinergic
GO:0008284 P positive regulation of cell population proliferation
GO:0015464 F acetylcholine receptor activity
GO:0015643 F toxic substance binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017081 F chloride channel regulator activity
GO:0030054 C cell junction
GO:0032720 P negative regulation of tumor necrosis factor production
GO:0034220 P ion transmembrane transport
GO:0035094 P response to nicotine
GO:0042166 F acetylcholine binding
GO:0042803 F protein homodimerization activity
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0045766 P positive regulation of angiogenesis
GO:0050890 P cognition
GO:0098655 P cation transmembrane transport
GO:0099565 P chemical synaptic transmission, postsynaptic
899 O_BomoFB1080_5prime_partial:A_BomoFB_comp2871_c0_seq1
341bp
 PREDICTED:_putative_E3_ubiquitin-protein_ligase_UBR7_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0046872 F metal ion binding
900 O_BomoFB10810_complete:A_BomoFB_comp9881_c1_seq2
1365bp
 PREDICTED:_uncharacterized_protein_LOC101741222_isoform_X2_[Bombyx_mori]
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