SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/25536
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
451 O_BomoFB10406_complete:A_BomoFB_comp9782_c0_seq2
133bp
 ATP-dependent_RNA_helicase_HrpA,_partial_[Arthrobacter_sp._I3]
452 O_BomoFB10407_complete:A_BomoFB_comp9782_c0_seq2
105bp
 putative_beta_chain_spectrin_[Operophtera_brumata]
453 O_BomoFB10408_3prime_partial:A_BomoFB_comp9782_c0_seq3
591bp
 PREDICTED:_spectrin_beta_chain,_non-erythrocytic_5_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005516 F calmodulin binding
GO:0005543 F phospholipid binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007009 P plasma membrane organization
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007274 P neuromuscular synaptic transmission
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0008017 F microtubule binding
GO:0008091 C spectrin
GO:0008092 F cytoskeletal protein binding
GO:0016199 P axon midline choice point recognition
GO:0016327 C apicolateral plasma membrane
GO:0016328 C lateral plasma membrane
GO:0030424 C axon
GO:0030506 F ankyrin binding
GO:0030721 P spectrosome organization
GO:0031594 C neuromuscular junction
GO:0042062 P long-term strengthening of neuromuscular junction
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045478 P fusome organization
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050807 P regulation of synapse organization
GO:0051693 P actin filament capping
GO:0072499 P photoreceptor cell axon guidance
454 O_BomoFB10409_5prime_partial:A_BomoFB_comp9782_c0_seq3
139bp
455 O_BomoFB1040_5prime_partial:A_BomoFB_comp2834_c0_seq1
130bp
 PREDICTED:_U2_snRNP-associated_SURP_motif-containing_protein_[Bombyx_mori]
456 O_BomoFB10410_complete:A_BomoFB_comp9782_c0_seq3
133bp
 ATP-dependent_RNA_helicase_HrpA,_partial_[Arthrobacter_sp._I3]
457 O_BomoFB10411_complete:A_BomoFB_comp9782_c0_seq3
105bp
 putative_beta_chain_spectrin_[Operophtera_brumata]
458 O_BomoFB10412_3prime_partial:A_BomoFB_comp9782_c0_seq4
591bp
 PREDICTED:_spectrin_beta_chain,_non-erythrocytic_5_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005516 F calmodulin binding
GO:0005543 F phospholipid binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007009 P plasma membrane organization
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007274 P neuromuscular synaptic transmission
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0008017 F microtubule binding
GO:0008091 C spectrin
GO:0008092 F cytoskeletal protein binding
GO:0016199 P axon midline choice point recognition
GO:0016327 C apicolateral plasma membrane
GO:0016328 C lateral plasma membrane
GO:0030424 C axon
GO:0030506 F ankyrin binding
GO:0030721 P spectrosome organization
GO:0031594 C neuromuscular junction
GO:0042062 P long-term strengthening of neuromuscular junction
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045478 P fusome organization
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050807 P regulation of synapse organization
GO:0051693 P actin filament capping
GO:0072499 P photoreceptor cell axon guidance
459 O_BomoFB10413_5prime_partial:A_BomoFB_comp9782_c0_seq4
139bp
460 O_BomoFB10414_complete:A_BomoFB_comp9782_c0_seq4
133bp
 ATP-dependent_RNA_helicase_HrpA,_partial_[Arthrobacter_sp._I3]
461 O_BomoFB10415_complete:A_BomoFB_comp9782_c0_seq4
107bp
462 O_BomoFB10416_complete:A_BomoFB_comp9782_c0_seq4
105bp
 putative_beta_chain_spectrin_[Operophtera_brumata]
463 O_BomoFB10417_complete:A_BomoFB_comp9783_c0_seq1
380bp
 PREDICTED:_loquacious_isoform_X5_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0034599 P cellular response to oxidative stress
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042473 P outer ear morphogenesis
GO:0042474 P middle ear morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048705 P skeletal system morphogenesis
GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
464 O_BomoFB10418_complete:A_BomoFB_comp9783_c0_seq2
335bp
 PREDICTED:_loquacious_isoform_X5_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0019899 F enzyme binding
GO:0030422 P production of siRNA involved in RNA interference
GO:0031047 P gene silencing by RNA
GO:0031054 P pre-miRNA processing
GO:0034599 P cellular response to oxidative stress
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
GO:0042473 P outer ear morphogenesis
GO:0042474 P middle ear morphogenesis
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0048471 C perinuclear region of cytoplasm
GO:0048705 P skeletal system morphogenesis
GO:2001244 P positive regulation of intrinsic apoptotic signaling pathway
465 O_BomoFB10419_complete:A_BomoFB_comp9784_c0_seq1
165bp
 PREDICTED:_zinc_finger_protein_709-like_[Bombyx_mori]
466 O_BomoFB1041_5prime_partial:A_BomoFB_comp2837_c0_seq1
289bp
 DNA-directed_RNA_polymerase_III_subunit_RPC6_[Operophtera_brumata]
GO:0001056 F RNA polymerase III activity
GO:0002376 P immune system process
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005666 C RNA polymerase III complex
GO:0006359 P regulation of transcription by RNA polymerase III
GO:0006383 P transcription by RNA polymerase III
GO:0032728 P positive regulation of interferon-beta production
GO:0032774 P RNA biosynthetic process
GO:0045087 P innate immune response
GO:0045089 P positive regulation of innate immune response
GO:0051607 P defense response to virus
467 O_BomoFB10420_complete:A_BomoFB_comp9784_c0_seq2
586bp
 PREDICTED:_zinc_finger_protein_62_homolog_isoform_X7_[Papilio_xuthus]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
468 O_BomoFB10421_complete:A_BomoFB_comp9784_c0_seq2
115bp
 hypothetical_protein_[Stenotrophomonas_maltophilia]
469 O_BomoFB10422_complete:A_BomoFB_comp9785_c0_seq1
516bp
 PREDICTED:_serine/threonine-protein_kinase_26_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000278 P mitotic cell cycle
GO:0003674 F molecular_function
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0008631 P intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0030336 P negative regulation of cell migration
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048680 P positive regulation of axon regeneration
470 O_BomoFB10423_complete:A_BomoFB_comp9786_c0_seq1
379bp
 chorion_b-ZIP_transcription_factor_[Bombyx_mori]
471 O_BomoFB10424_complete:A_BomoFB_comp9786_c0_seq2
513bp
 chorion_b-ZIP_transcription_factor_[Bombyx_mori]
472 O_BomoFB10425_complete:A_BomoFB_comp9786_c0_seq2
125bp
473 O_BomoFB10426_complete:A_BomoFB_comp9786_c0_seq2
110bp
 50S_ribosomal_protein_L31_[Acidianus_hospitalis]
474 O_BomoFB10427_complete:A_BomoFB_comp9786_c0_seq3
554bp
 chorion_b-ZIP_transcription_factor_[Bombyx_mori]
475 O_BomoFB10428_complete:A_BomoFB_comp9786_c0_seq4
513bp
 chorion_b-ZIP_transcription_factor_[Bombyx_mori]
476 O_BomoFB10429_complete:A_BomoFB_comp9786_c0_seq4
125bp
477 O_BomoFB1042_5prime_partial:A_BomoFB_comp2841_c0_seq1
787bp
 PREDICTED:_AT-rich_interactive_domain-containing_protein_4B_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006349 P regulation of gene expression by genomic imprinting
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0016575 P histone deacetylation
GO:0017053 C transcription repressor complex
GO:0034773 P histone H4-K20 trimethylation
GO:0036124 P histone H3-K9 trimethylation
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048821 P erythrocyte development
GO:0080182 P histone H3-K4 trimethylation
GO:0097368 P establishment of Sertoli cell barrier
478 O_BomoFB10430_complete:A_BomoFB_comp9786_c0_seq4
110bp
 50S_ribosomal_protein_L31_[Acidianus_hospitalis]
479 O_BomoFB10431_complete:A_BomoFB_comp9786_c0_seq5
338bp
 chorion_b-ZIP_transcription_factor_[Bombyx_mori]
480 O_BomoFB10432_complete:A_BomoFB_comp9786_c0_seq5
125bp
previous next from show/25536

- SilkBase 1999-2023 -