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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
421 O_BomoFB1037_5prime_partial:A_BomoFB_comp2831_c0_seq1
599bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_mediator_of_RNA_polymerase_II_transcription_subunit_24_[Bombyx_mori]
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
422 O_BomoFB10380_5prime_partial:A_BomoFB_comp9774_c0_seq1
320bp
 microvitellogenin-like_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
423 O_BomoFB10381_complete:A_BomoFB_comp9775_c0_seq1
838bp
 PREDICTED:_splicing_factor_3B_subunit_1_isoform_X1_[Papilio_xuthus]
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
424 O_BomoFB10382_complete:A_BomoFB_comp9775_c0_seq1
156bp
425 O_BomoFB10383_complete:A_BomoFB_comp9775_c0_seq1
112bp
 PREDICTED:_uncharacterized_protein_LOC105033695_[Elaeis_guineensis]
426 O_BomoFB10384_3prime_partial:A_BomoFB_comp9775_c0_seq2
746bp
 PREDICTED:_splicing_factor_3B_subunit_1_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
427 O_BomoFB10385_3prime_partial:A_BomoFB_comp9775_c0_seq3
1215bp
 PREDICTED:_splicing_factor_3B_subunit_1_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
428 O_BomoFB10386_complete:A_BomoFB_comp9775_c0_seq3
156bp
429 O_BomoFB10387_complete:A_BomoFB_comp9775_c0_seq3
112bp
 PREDICTED:_uncharacterized_protein_LOC105033695_[Elaeis_guineensis]
430 O_BomoFB10388_complete:A_BomoFB_comp9775_c0_seq4
369bp
 PREDICTED:_splicing_factor_3B_subunit_1_[Amyelois_transitella]
GO:0000245 P spliceosomal complex assembly
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0034693 C U11/U12 snRNP
GO:0044822 F RNA binding
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
431 O_BomoFB10389_complete:A_BomoFB_comp9775_c0_seq5
868bp
 PREDICTED:_splicing_factor_3B_subunit_1_[Amyelois_transitella]
GO:0000245 P spliceosomal complex assembly
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0034693 C U11/U12 snRNP
GO:0044822 F RNA binding
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
432 O_BomoFB1038_complete:A_BomoFB_comp2833_c0_seq1
338bp
 PREDICTED:_phosphatidate_cytidylyltransferase,_mitochondrial_[Papilio_xuthus]
GO:0004605 F phosphatidate cytidylyltransferase activity
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006629 P lipid metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016024 P CDP-diacylglycerol biosynthetic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0031314 C extrinsic component of mitochondrial inner membrane
GO:0032049 P cardiolipin biosynthetic process
433 O_BomoFB10390_complete:A_BomoFB_comp9775_c0_seq6
1337bp
 PREDICTED:_splicing_factor_3B_subunit_1_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
434 O_BomoFB10391_complete:A_BomoFB_comp9775_c0_seq6
156bp
435 O_BomoFB10392_complete:A_BomoFB_comp9775_c0_seq6
112bp
 PREDICTED:_uncharacterized_protein_LOC105033695_[Elaeis_guineensis]
436 O_BomoFB10393_complete:A_BomoFB_comp9777_c0_seq1
105bp
 PREDICTED:_migration_and_invasion_enhancer_1_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0030335 P positive regulation of cell migration
GO:0031235 C intrinsic component of the cytoplasmic side of the plasma membrane
GO:0043066 P negative regulation of apoptotic process
GO:0051491 P positive regulation of filopodium assembly
GO:0070062 C extracellular exosome
437 O_BomoFB10394_complete:A_BomoFB_comp9777_c0_seq2
105bp
 PREDICTED:_migration_and_invasion_enhancer_1_[Amyelois_transitella]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006915 P apoptotic process
GO:0016020 C membrane
GO:0030335 P positive regulation of cell migration
GO:0031235 C intrinsic component of the cytoplasmic side of the plasma membrane
GO:0043066 P negative regulation of apoptotic process
GO:0051491 P positive regulation of filopodium assembly
GO:0070062 C extracellular exosome
438 O_BomoFB10395_5prime_partial:A_BomoFB_comp9779_c0_seq2
101bp
 putative_murein_biosynthesis_integral_membrane_protein_MurJ_[Atopobium_sp._BV3Ac4]
439 O_BomoFB10396_5prime_partial:A_BomoFB_comp9779_c0_seq5
101bp
 putative_murein_biosynthesis_integral_membrane_protein_MurJ_[Atopobium_sp._BV3Ac4]
440 O_BomoFB10397_complete:A_BomoFB_comp9779_c2_seq1
169bp
 actin_related_protein_2/3_complex_subunit_4_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005885 C Arp2/3 protein complex
GO:0015629 C actin cytoskeleton
GO:0019899 F enzyme binding
GO:0030041 P actin filament polymerization
GO:0030674 F protein-macromolecule adaptor activity
GO:0034314 P Arp2/3 complex-mediated actin nucleation
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
441 O_BomoFB10398_5prime_partial:A_BomoFB_comp9780_c0_seq1
338bp
 PREDICTED:_beta-1,3-galactosyltransferase_4-like,_partial_[Papilio_machaon]
GO:0000139 C Golgi membrane
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0006486 P protein glycosylation
GO:0007275 P multicellular organism development
GO:0007417 P central nervous system development
GO:0007420 P brain development
GO:0008378 F galactosyltransferase activity
GO:0008457 F beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity
GO:0008499 F UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity
GO:0009247 P glycolipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016266 P O-glycan processing
GO:0016740 F transferase activity
GO:0016757 F glycosyltransferase activity
GO:0047256 F lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase activity
442 O_BomoFB10399_5prime_partial:A_BomoFB_comp9781_c0_seq1
577bp
 PREDICTED:_tubulin-specific_chaperone_E_[Papilio_polytes]
GO:0000226 P microtubule cytoskeleton organization
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006457 P protein folding
GO:0007021 P tubulin complex assembly
GO:0007023 P post-chaperonin tubulin folding pathway
GO:0007409 P axonogenesis
GO:0008344 P adult locomotory behavior
GO:0009791 P post-embryonic development
GO:0014889 P muscle atrophy
GO:0048589 P developmental growth
GO:0048936 P peripheral nervous system neuron axonogenesis
GO:0051082 F unfolded protein binding
443 O_BomoFB1039_5prime_partial:A_BomoFB_comp2834_c0_seq1
167bp
 hypothetical_protein_BRAFLDRAFT_87382_[Branchiostoma_floridae]
444 O_BomoFB103_complete:A_BomoFB_comp295_c0_seq1
131bp
445 O_BomoFB10400_3prime_partial:A_BomoFB_comp9782_c0_seq1
591bp
 PREDICTED:_spectrin_beta_chain,_non-erythrocytic_5_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005516 F calmodulin binding
GO:0005543 F phospholipid binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007009 P plasma membrane organization
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007274 P neuromuscular synaptic transmission
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0008017 F microtubule binding
GO:0008091 C spectrin
GO:0008092 F cytoskeletal protein binding
GO:0016199 P axon midline choice point recognition
GO:0016327 C apicolateral plasma membrane
GO:0016328 C lateral plasma membrane
GO:0030424 C axon
GO:0030506 F ankyrin binding
GO:0030721 P spectrosome organization
GO:0031594 C neuromuscular junction
GO:0042062 P long-term strengthening of neuromuscular junction
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045478 P fusome organization
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050807 P regulation of synapse organization
GO:0051693 P actin filament capping
GO:0072499 P photoreceptor cell axon guidance
446 O_BomoFB10401_5prime_partial:A_BomoFB_comp9782_c0_seq1
139bp
447 O_BomoFB10402_complete:A_BomoFB_comp9782_c0_seq1
133bp
 ATP-dependent_RNA_helicase_HrpA,_partial_[Arthrobacter_sp._I3]
448 O_BomoFB10403_complete:A_BomoFB_comp9782_c0_seq1
105bp
 putative_beta_chain_spectrin_[Operophtera_brumata]
449 O_BomoFB10404_3prime_partial:A_BomoFB_comp9782_c0_seq2
591bp
 PREDICTED:_spectrin_beta_chain,_non-erythrocytic_5_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005516 F calmodulin binding
GO:0005543 F phospholipid binding
GO:0005546 F phosphatidylinositol-4,5-bisphosphate binding
GO:0005737 C cytoplasm
GO:0005811 C lipid droplet
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0007009 P plasma membrane organization
GO:0007026 P negative regulation of microtubule depolymerization
GO:0007274 P neuromuscular synaptic transmission
GO:0007399 P nervous system development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0008017 F microtubule binding
GO:0008091 C spectrin
GO:0008092 F cytoskeletal protein binding
GO:0016199 P axon midline choice point recognition
GO:0016327 C apicolateral plasma membrane
GO:0016328 C lateral plasma membrane
GO:0030424 C axon
GO:0030506 F ankyrin binding
GO:0030721 P spectrosome organization
GO:0031594 C neuromuscular junction
GO:0042062 P long-term strengthening of neuromuscular junction
GO:0045169 C fusome
GO:0045170 C spectrosome
GO:0045478 P fusome organization
GO:0048790 P maintenance of presynaptic active zone structure
GO:0050807 P regulation of synapse organization
GO:0051693 P actin filament capping
GO:0072499 P photoreceptor cell axon guidance
450 O_BomoFB10405_5prime_partial:A_BomoFB_comp9782_c0_seq2
139bp
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